Search result

BaseInfo

ncRNA ID	novel_gar_miR50
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr5:10113868-10113980 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR3180719;SRR3180721
Length	21
Mature sequence(if miRNA)	93 - ACUCUCCUUCAAAGGCUUCAU - 113
Stem-loop(if miRNA)	--       UU      C      A  -CAA  UG       G          UUAA   ACUCUCC  CAAAGG UUCAUC GC    CA  UCAUUAU UGCAAGAGCU    U   |||||||  |||||| |||||| ||    ||  ||||||| ||||||||||   UGAGAGG  GUUUCC AAGUGG UG    GU  AGUGGUA ACGUUCUCGA    U CC       UU      C      G  UCAC  UA       A          UUAA
Stem-loop sequence	ACUCUCCUUCAAAGGCUUCAUCAGCCAACAUGUCAUUAUGUGCAAGAGCUUUAAUUAAUUAGCUCUUGCAAAUGGUGAAUUGCACUGUGGGUGAACCCUUUGUUGGAGAGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017772311.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   *||||||||||||||||||*| targets:1598   CUGAAGCCUUUGAAGGAGACU   1618 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108470819 (LOC108470819), transcript variant X2, mRNA	uncharacterized LOC108470819(LOC108470819)	coding protein	psRNATarget
XM_017772304.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   *||||||||||||||||||*| targets:1619   CUGAAGCCUUUGAAGGAGACU   1639 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108470819 (LOC108470819), transcript variant X1, mRNA	uncharacterized LOC108470819(LOC108470819)	coding protein	psRNATarget
XM_017777179.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   |||||||=|||||||||||*| targets:586   AUGAAGCUUUUGAAGGAGAAU   606 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108475194 (LOC108475194), mRNA	uncharacterized LOC108475194(LOC108475194)	coding protein	psRNATarget
XM_017792809.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   |||||||=*|||||||||||| targets:1269   AUGAAGCUGUUGAAGGAGAGU   1289 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum patatin-like protein 1 (LOC108488529), mRNA	patatin-like protein 1(LOC108488529)	coding protein	psRNATarget
XM_017764139.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   |*||||*|||||||*|||||| targets:400   AAGAAGGCUUUGAAUGAGAGU   420 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription factor bHLH49-like (LOC108464057), transcript variant X6, mRNA	transcription factor bHLH49-like(LOC108464057)	coding protein	psRNATarget
XM_017764136.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   |*||||*|||||||*|||||| targets:403   AAGAAGGCUUUGAAUGAGAGU   423 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription factor bHLH49-like (LOC108464057), transcript variant X2, mRNA	transcription factor bHLH49-like(LOC108464057)	coding protein	psRNATarget
XM_017764135.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   |*||||*|||||||*|||||| targets:403   AAGAAGGCUUUGAAUGAGAGU   423 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription factor bHLH49-like (LOC108464057), transcript variant X1, mRNA	transcription factor bHLH49-like(LOC108464057)	coding protein	psRNATarget
XM_017764138.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   |*||||*|||||||*|||||| targets:403   AAGAAGGCUUUGAAUGAGAGU   423 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription factor bHLH49-like (LOC108464057), transcript variant X4, mRNA	transcription factor bHLH49-like(LOC108464057)	coding protein	psRNATarget
XM_017764137.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   |*||||*|||||||*|||||| targets:403   AAGAAGGCUUUGAAUGAGAGU   423 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription factor bHLH49-like (LOC108464057), transcript variant X3, mRNA	transcription factor bHLH49-like(LOC108464057)	coding protein	psRNATarget