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BaseInfo

ncRNA ID	novel_gar_miR45
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr5:14690964-14691063 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588;SRR3180715;SRR3180720;SRR3180721;SRR959748;SRR959750
Length	21
Mature sequence(if miRNA)	1 - CUGAAGUGUUUGGGGGAACUC - 21
Stem-loop(if miRNA)	--       UG U       CUG       --   GU  -G    UCUUAGA   GUUCCCC  A CACUUCA   GGGUUAU  GGG  CU  CUCU       G   |||||||  | |||||||   |||||||  |||  ||  ||||   CAAGGGG  U GUGAAGU   CCCAGUA  CCC  GA  GGAA       C CU       GU U       -CA       GU   UG  GG    AUUGUUC
Stem-loop sequence	GUUCCCCUGAUCACUUCACUGGGGUUAUGGGGUCUGCUCUUCUUAGAGCCUUGUUAAAGGGGAGGUCCCUGAUGACCCACUGAAGUGUUUGGGGGAACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017760230.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||||||||||||||||* targets:176   AAGUUCCCCCAAACACUUCAA   196 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum serine hydroxymethyltransferase 7-like (LOC108460652), transcript variant X1, mRNA	serine hydroxymethyltransferase 7-like(LOC108460652)	coding protein	psRNATarget
XM_017792734.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   |=|||*||||||||||||||* targets:164   GGGUUACCCCAAACACUUCAA   184 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum sulfate transporter 2.1-like (LOC108488456), mRNA	sulfate transporter 2.1-like(LOC108488456)	coding protein	psRNATarget
XM_017792733.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   |=|||*||||||||||||||* targets:164   GGGUUACCCCAAACACUUCAA   184 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum sulfate transporter 2.1-like (LOC108488455), mRNA	sulfate transporter 2.1-like(LOC108488455)	coding protein	psRNATarget
XM_017761582.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *=|*|=|=||||||||||||| targets:72   CGGAUUCUCCAAACACUUCAG   92 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum mitochondrial import inner membrane translocase subunit TIM22-2-like (LOC108461677), mRNA	mitochondrial import inner membrane translocase subunit TIM22-2-like(LOC108461677)	coding protein	psRNATarget