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BaseInfo

ncRNA ID	ath-miRf10945-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UCGACCUGGUGGUCGAGUGG - NA
Stem-loop(if miRNA)	--U          GGU          -AUG   AGA  GGC   AAA  C        U GAGG   UACUCGACCU   GGUCGAGUGG    GGA   AU   UCC   GU ACUCGACC G ||||   ||||||||||   ||||||||||    |||   ||   |||   || |||||||| CUUC   AUGAGCUGGG   CCAGCUCACU    CCU   UA   AGG   UA UGAGCUGG G     UGU          GGU          GAAA   CGG  AGA   GUG  -        G
Stem-loop sequence	GAGGUUACUCGACCUGGUGGUCGAGUGGAUGGGAAGAAUGGCUCCAAAGUCACUCGACCUGGGGGUCGAGUAUGUGGGAAGAAUGGCUCCAAAGUCACUCGACCUGGGGGUCGAGUAUGUCUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183194.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   |||||||||||||||||||| targets:449   CCACUCGACCACCAGGUCGA   468 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   ||||||||||*||||||||| targets:1104   CCACUCGACCCCCAGGUCGA   1123 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   ||||||||||||*||||||| targets:1150   CCACUCGACCACGAGGUCGA   1169 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
AY227642.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   |||||||||*|||||||||| targets:808   CCACUCGACAACCAGGUCGA   827 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   ||||||||||||*||||||| targets:1526   CCACUCGACCACGAGGUCGA   1545 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   *=|||||||||||||||||* targets:108   AUACUCGACCACCAGGUCGC   127 Target Full Sequence	2.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT025674.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   |=||||||||*||||||||| targets:187   CUACUCGACCCCCAGGUCGA   206 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT012022.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*||||*|||||||| targets:34   UCACUCUACCAACAGGUCGA   53 Target Full Sequence	2.5	Arabidopsis thaliana At2g10890 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*||||*|||||||| targets:317   UCACUCUACCAACAGGUCGA   336 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*||||*|||||||| targets:365   UCACUCUACCAACAGGUCGA   384 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*||||*|||||||| targets:413   UCACUCUACCAACAGGUCGA   432 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*|||||||*||||| targets:656   UCACUCUACCACCAAGUCGA   675 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*||||*|||||||| targets:692   UCACUCUACCAACAGGUCGA   711 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*||||*|||||||| targets:740   UCACUCUACCAACAGGUCGA   759 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*||||*|||||||| targets:788   UCACUCUACCAACAGGUCGA   807 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*|||||||*||||| targets:1031   UCACUCUACCACCAAGUCGA   1050 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*||||*|||||||| targets:692   UCACUCUACCAACAGGUCGA   711 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*||||*|||||||| targets:740   UCACUCUACCAACAGGUCGA   759 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*||||*|||||||| targets:788   UCACUCUACCAACAGGUCGA   807 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*|||||||*||||| targets:1031   UCACUCUACCACCAAGUCGA   1050 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   *=||||||||*||||||||| targets:136   AUACUCGACCCCCAGGUCGA   155 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   *=||||||||*||||||||| targets:136   AUACUCGACCCCCAGGUCGA   155 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   ||||||*|||||*||||||| targets:44   CCACUCAACCACAAGGUCGA   63 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:20   GGUGAGCUGGUGGUCCAGCU   1   =|||||*||||*|||||||| targets:145   UCACUCUACCAACAGGUCGA   164 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget