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BaseInfo

ncRNA ID	novel_gar_miR40
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr5:25997208-25997326 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587
Length	24
Mature sequence(if miRNA)	1 - AAUUUUUAACAGUAGAAAUGGAUG - 24
Stem-loop(if miRNA)	--     A             U     CU    A  U      -------   G         C   UCCAU UCUACUGUUAAAA UUGGC  UUGU UG UAGAAU       GAG UACACAUGA A   ||||| ||||||||||||| |||||  |||| || ||||||       ||| |||||||||   AGGUA AGAUGACAAUUUU AACUG  AACG AC AUUUUA       CUC AUGUGUACU U GU     A             U     -U    -  U      UUGGUCU   A         A
Stem-loop sequence	UCCAUAUCUACUGUUAAAAUUUGGCCUUUGUAUGUUAGAAUGAGGUACACAUGACAUAUCAUGUGUAACUCUCUGGUUAUUUUAUCAGCAAUGUCAAUUUUUAACAGUAGAAAUGGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017752821.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   ||||=||||*|||||||||||||| targets:2578   CAUCUAUUUAUACUGUUAAAAAUU   2601 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108454377 (LOC108454377), mRNA	uncharacterized LOC108454377(LOC108454377)	coding protein	psRNATarget
XM_017782061.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   ||||=||||*|||||||||||||| targets:2095   CAUCUAUUUGUACUGUUAAAAAUU   2118 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X7, mRNA	F-box/kelch-repeat protein At3g06240-like(LOC108479450)	coding protein	psRNATarget
XM_017782054.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   ||||=||||*|||||||||||||| targets:2095   CAUCUAUUUGUACUGUUAAAAAUU   2118 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X1, mRNA	F-box/kelch-repeat protein At3g06240-like(LOC108479450)	coding protein	psRNATarget
XM_017782060.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   ||||=||||*|||||||||||||| targets:2095   CAUCUAUUUGUACUGUUAAAAAUU   2118 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X6, mRNA	F-box/kelch-repeat protein At3g06240-like(LOC108479450)	coding protein	psRNATarget
XM_017782059.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   ||||=||||*|||||||||||||| targets:2095   CAUCUAUUUGUACUGUUAAAAAUU   2118 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X5, mRNA	F-box/kelch-repeat protein At3g06240-like(LOC108479450)	coding protein	psRNATarget
XM_017782058.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   ||||=||||*|||||||||||||| targets:2095   CAUCUAUUUGUACUGUUAAAAAUU   2118 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X4, mRNA	F-box/kelch-repeat protein At3g06240-like(LOC108479450)	coding protein	psRNATarget
XM_017782064.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   ||||=||||*|||||||||||||| targets:2074   CAUCUAUUUGUACUGUUAAAAAUU   2097 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X10, mRNA	F-box/kelch-repeat protein At3g06240-like(LOC108479450)	coding protein	psRNATarget
XM_017754696.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   =|||=*|||||||||||||||||| targets:1412   UAUCUUUUUCUACUGUUAAAAAUU   1435 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X1, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017754697.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   =|||=*|||||||||||||||||| targets:1412   UAUCUUUUUCUACUGUUAAAAAUU   1435 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X2, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017760336.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   ||||=|||||||||*||||||||| targets:2190   CAUCUAUUUCUACUAUUAAAAAUU   2213 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X1, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017760338.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   ||||=|||||||||*||||||||| targets:2286   CAUCUAUUUCUACUAUUAAAAAUU   2309 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X2, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017783891.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   =|||=||||||||*|||||||||| targets:859   UAUCUAUUUCUACAGUUAAAAAUU   882 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum nudix hydrolase 25 (LOC108480791), mRNA	nudix hydrolase 25(LOC108480791)	coding protein	psRNATarget
XM_017755393.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   =|||=|||||||||||||||||*| targets:2191   UAUCUAUUUCUACUGUUAAAAAAU   2214 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108456750 (LOC108456750), transcript variant X3, mRNA	uncharacterized LOC108456750(LOC108456750)	coding protein	psRNATarget
XM_017755392.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   =|||=|||||||||||||||||*| targets:2293   UAUCUAUUUCUACUGUUAAAAAAU   2316 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108456750 (LOC108456750), transcript variant X2, mRNA	uncharacterized LOC108456750(LOC108456750)	coding protein	psRNATarget
XM_017755391.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   =|||=|||||||||||||||||*| targets:2295   UAUCUAUUUCUACUGUUAAAAAAU   2318 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108456750 (LOC108456750), transcript variant X1, mRNA	uncharacterized LOC108456750(LOC108456750)	coding protein	psRNATarget
XM_017759173.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   ||||*|||||||||||||||||*| targets:2529   CAUCAAUUUCUACUGUUAAAAACU   2552 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108459768 (LOC108459768), mRNA	uncharacterized LOC108459768(LOC108459768)	coding protein	psRNATarget
XM_017787028.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   =||==|||||||||*||||||||| targets:4362   UAUUUAUUUCUACUAUUAAAAAUU   4385 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum RNA polymerase II C-terminal domain phosphatase-like 1 (LOC108483565), transcript variant X1, mRNA	RNA polymerase II C-terminal domain phosphatase-like 1(LOC108483565)	coding protein	psRNATarget
XM_017770301.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   ||||=||||=||=||||||||||| targets:816   CAUCUAUUUUUAUUGUUAAAAAUU   839 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum casparian strip membrane protein 2-like (LOC108469414), mRNA	casparian strip membrane protein 2-like(LOC108469414)	coding protein	psRNATarget
XM_017786407.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   |||=|||||=|=|||||||||||| targets:1496   CAUUCAUUUUUGCUGUUAAAAAUU   1519 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum serine acetyltransferase 4-like (LOC108483085), transcript variant X2, mRNA	serine acetyltransferase 4-like(LOC108483085)	coding protein	psRNATarget
XM_017786487.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   |||=|||||=|=|||||||||||| targets:1504   CAUUCAUUUUUGCUGUUAAAAAUU   1527 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum serine acetyltransferase 4-like (LOC108483085), transcript variant X3, mRNA	serine acetyltransferase 4-like(LOC108483085)	coding protein	psRNATarget
XM_017786327.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   |||=|||||=|=|||||||||||| targets:1739   CAUUCAUUUUUGCUGUUAAAAAUU   1762 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum serine acetyltransferase 4-like (LOC108483085), transcript variant X1, mRNA	serine acetyltransferase 4-like(LOC108483085)	coding protein	psRNATarget
XM_017753535.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   ||||=||||=||||||||*||||| targets:1618   CAUCUAUUUUUACUGUUAUAAAUU   1641 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108454910 (LOC108454910), transcript variant X3, mRNA	uncharacterized LOC108454910(LOC108454910)	coding protein	psRNATarget
XM_017755393.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   *||=*||||=|*|||||||||||| targets:2166   AAUUGAUUUUUUCUGUUAAAAAUU   2189 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108456750 (LOC108456750), transcript variant X3, mRNA	uncharacterized LOC108456750(LOC108456750)	coding protein	psRNATarget
XM_017755392.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   *||=*||||=|*|||||||||||| targets:2268   AAUUGAUUUUUUCUGUUAAAAAUU   2291 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108456750 (LOC108456750), transcript variant X2, mRNA	uncharacterized LOC108456750(LOC108456750)	coding protein	psRNATarget
XM_017755391.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   *||=*||||=|*|||||||||||| targets:2270   AAUUGAUUUUUUCUGUUAAAAAUU   2293 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108456750 (LOC108456750), transcript variant X1, mRNA	uncharacterized LOC108456750(LOC108456750)	coding protein	psRNATarget
XM_017758923.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   =|||=||||*||=||||||||||| targets:1891   UAUCUAUUUGUAUUGUUAAAAAUU   1914 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum synaptotagmin-4-like (LOC108459539), transcript variant X1, mRNA	synaptotagmin-4-like(LOC108459539)	coding protein	psRNATarget
XM_017768432.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   =||||*|||*|||||||||||||* targets:2545   UAUCCUUUUGUACUGUUAAAAAUG   2568 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum tetratricopeptide repeat protein 7A-like (LOC108467698), transcript variant X2, mRNA	tetratricopeptide repeat protein 7A-like(LOC108467698)	coding protein	psRNATarget
XM_017768430.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   =||||*|||*|||||||||||||* targets:2800   UAUCCUUUUGUACUGUUAAAAAUG   2823 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum tetratricopeptide repeat protein 7A-like (LOC108467698), transcript variant X1, mRNA	tetratricopeptide repeat protein 7A-like(LOC108467698)	coding protein	psRNATarget
XM_017780753.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   =||=|||*|*|||||||||||||* targets:2   UAUUCAUAUAUACUGUUAAAAAUA   25 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum GDSL esterase/lipase At4g10955-like (LOC108478307), mRNA	GDSL esterase/lipase At4g10955-like(LOC108478307)	coding protein	psRNATarget
XM_017754395.1	ncRNA:24   GUAGGUAAAGAUGACAAUUUUUAA   1   =||=|||*|*|||||||||||||* targets:2   UAUUCAUAUAUACUGUUAAAAAUA   25 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum GDSL esterase/lipase At4g10955-like (LOC108455830), mRNA	GDSL esterase/lipase At4g10955-like(LOC108455830)	coding protein	psRNATarget