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BaseInfo

ncRNA ID	novel_gar_miR39
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr5:26059354-26059498 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587
Length	24
Mature sequence(if miRNA)	122 - UCAAAGAGCAAAUUGAUCUUUUCU - 145
Stem-loop(if miRNA)	--                         C                      UAA        AACAU  C  G  U   UCAAAGAGCAAAUUGAUCUUUUCUG UGAAAAUUUCAUUUAUUUUUAC   UAAAAACU     GG UC UG A   ||||||||||||||||||||||||| ||||||||||||||||||||||   ||||||||     || || || C   AGUUUCUCGUUUAACUAGAAAAGAC ACUUUUAAAGUAGAUAAAAAUG   AUUUUUGA     CC AG AC C UU                         -                      UCA        -----  A  A  U
Stem-loop sequence	UCAAAGAGCAAAUUGAUCUUUUCUGCUGAAAAUUUCAUUUAUUUUUACUAAUAAAAACUAACAUGGCUCGUGUACCUCAAGAACCAGUUUUUAACUGUAAAAAUAGAUGAAAUUUUCACAGAAAAGAUCAAUUUGCUCUUUGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017794441.1	ncRNA:24   UCUUUUCUAGUUAAACGAGAAACU   1   **|||=||*||||||||||||||| targets:1344   CAAAAGGACCAAUUUGCUCUUUGA   1367 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized LOC108489730 (LOC108489730), mRNA	uncharacterized LOC108489730(LOC108489730)	coding protein	psRNATarget
XM_017763590.1	ncRNA:24   UCUUUUCUAGUUAAACGAGAAACU   1   |*|||||||=||||||||=||||| targets:1498   AAAAAAGAUUAAUUUGCUUUUUGA   1521 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108463679 (LOC108463679), transcript variant X3, mRNA	uncharacterized LOC108463679(LOC108463679)	coding protein	psRNATarget
XM_017786952.1	ncRNA:24   UCUUUUCUAGUUAAACGAGAAACU   1   ***||=||||||||||||||||*| targets:2040   UAUAAGGAUCAAUUUGCUCUUUAA   2063 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum MACPF domain-containing protein NSL1-like (LOC108483506), mRNA	MACPF domain-containing protein NSL1-like(LOC108483506)	coding protein	psRNATarget
XM_017763358.1	ncRNA:24   UCU-UUUCUAGUUAAACGAGAAACU   1   *||-=|||*|=|||||||||||||= targets:57   UGAUGAAGCUUAAUUUGCUCUUUGG   81 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum thaumatin-like protein 1b (LOC108463416), mRNA	thaumatin-like protein 1b(LOC108463416)	coding protein	psRNATarget