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BaseInfo

ncRNA ID novel_gar_miR38
Species Gossypium arboreum
Class miRNA
Genome position Chr5:29615543-29615628 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587;SRR1029586
Length 24
Mature sequence(if miRNA) 63 - GAUUAAGCCCGGACGGGUGAUCCU - 86
Stem-loop(if miRNA) --    AA     GA     --     UAUCCUG     GCCC  U
  GAUU  GCCCG  CGGGU  GAUCC       AUAUA    UC C
  ||||  |||||  |||||  |||||       |||||    || G
  CUAA  UGGGC  GCCCG  UUAGG       UGUGU    AG A
GU    --     AG     AU     --UAAAA     -AUA  A
Stem-loop sequence GAUUAAGCCCGGACGGGUGAUCCUAUCCUGAUAUAGCCCUCUCGAAGAAUAUGUGUAAAAUGGAUUUAGCCCGGACGGGUAAUCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017775300.1
ncRNA:24   UCCUAGUGGGCAGGCCCGAAUUAG   1
  *||=-||*||*|||||||||||||
targets:539   UGGG-CAGCCUUCCGGGCUUAAUC   561

2.0 PREDICTED: Gossypium arboreum cytochrome P450 86A8-like (LOC108473626), mRNA cytochrome P450 86A8-like(LOC108473626) coding protein psRNATarget