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BaseInfo

ncRNA ID	novel_gar_miR33
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr5:36769682-36769899 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587
Length	24
Mature sequence(if miRNA)	195 - AUGUCCGGAUUCAUUUGGAUGGUU - 218
Stem-loop(if miRNA)	--A                -    GU             A   A  GUA       UUA       -     UUUU        -UU  A     AU   CAUCCUAAGACA    UGUCCGGAUUCAUUUG GAUG  UUUUCUAAAUUAU UAA GU   AAAAAUA   AAAAUUA AUUUU    AAAAAAUU   AU UGUAU  AUG            C    |||||||||||||||| ||||  ||||||||||||| ||| ||   |||||||   ||||||| |||||    ||||||||   || |||||  |||            U    ACAGGUCUAAGUAAGU CUAC  AAAAGAUUUAAUA AUU CA   UUUUUAU   UUUUAAU UAAAA    UUUUUUAA   UA ACAUA  UAC            A UAA                U    UU             C   G  -AA       UAA       A     ---U        CUU  C     GC   AAAAUUAAGAUA
Stem-loop sequence	AUGUCCGGAUUCAUUUGGAUGGUUUUUCUAAAUUAUAUAAAGUGUAAAAAAUAUUAAAAAUUAAUUUUUUUUAAAAAAUUUUAUAUGUAUAUAUGCAUCCUAAGACACUAAUAGAAUUAAAACAUCGAUACACAUUUCAAUUUUUUUAAAAUAUAAUUUUAAUUAUUUUUAAACGUUACAUAAUUUAGAAAAUUCAUCUUGAAUGAAUCUGGACAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017788355.1	ncRNA:24   UUGGUAG---GUUUACUUAGGCCUGUA   1   *==**||---||||||||||||||||| targets:884   UGUGCUCUGGCAAAUGAAUCCGGACAU   910 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108484534 (LOC108484534), mRNA	uncharacterized LOC108484534(LOC108484534)	coding protein	psRNATarget