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BaseInfo

ncRNA ID novel_gar_miR26
Species Gossypium arboreum
Class miRNA
Genome position Chr4:57527919-57527984 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - AAAAGAUUGGUGGCGACUCCAUGU - 24
Stem-loop(if miRNA) --       U  U  -     CC     CGUUUU
  AAAAGAU GG GG CGACU  AUGUU      C
  ||||||| || || |||||  |||||
  UUUUUUG CC CU GCUGA  UAUAA      U
AC       C  -  A     AA     AACUUU
Stem-loop sequence AAAAGAUUGGUGGCGACUCCAUGUUCGUUUUCUUUUCAAAAUAUAAAGUCGAUCCCCGUUUUUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017754579.1
ncRNA:24   UGUACCUCAGCGGUGGUUAGAAAA   1
  ===||||||=|||||||||*||||
targets:2314   GUGUGGAGUUGCCACCAAUAUUUU   2337

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108455991 (LOC108455991), mRNA uncharacterized LOC108455991(LOC108455991) coding protein psRNATarget
XM_017762305.1
ncRNA:24   UGUACCUCAGCGGUGGUUAG-AAAA   1
  *||-||||||||||||||||-||||
targets:810   CCA-GGAGUCGCCACCAAUCCUUUU   833

3.0 PREDICTED: Gossypium arboreum UPF0481 protein At3g47200-like (LOC108462343), mRNA UPF0481 protein At3g47200-like(LOC108462343) coding protein psRNATarget