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BaseInfo

ncRNA ID novel_gar_miR12
Species Gossypium arboreum
Class miRNA
Genome position Chr4:15224803-15224879 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587;SRR1029588;SRR1029586;SRR3180721
Length 24
Mature sequence(if miRNA) 54 - AUACUGUAUUCCUUUGAAACAAGC - 77
Stem-loop(if miRNA) --    U  A   C         AGC    --  UG  GU
  AUAC GU UUC UUUGAAACA   GAAU  CU  AA  C
  |||| || ||| |||||||||   ||||  ||  ||
  UAUG UA AAG AAAUUUUGU   CUUA  GA  UU  U
UU    C  -   A         GAA    CU  GU  AA
Stem-loop sequence AUACUGUAUUCCUUUGAAACAAGCGAAUCUUGAAGUCUAAUUUGAGUCAUUCAAGUGUUUUAAAAGAAAUCGUAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017767062.1
ncRNA:24   CGAACAAAGUUUCCUUAUGUCAUA   1
  ****||||||||||||||||*||*
targets:1608   UAAGGUUUCAAAGGAAUACAUUAA   1631

2.5 PREDICTED: Gossypium arboreum potassium transporter 5 (LOC108466688), mRNA potassium transporter 5(LOC108466688) coding protein psRNATarget