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BaseInfo

ncRNA ID	novel_gar_miR9
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr4:27183023-27183117 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588;SRR3180715;SRR3180719;SRR1029586;SRR3180720;SRR3180721
Length	21
Mature sequence(if miRNA)	75 - UGGAGAAGCAGGGCACGUGCA - 95
Stem-loop(if miRNA)	--        CA              -----------A UG  UGAAUUGGUGC   UGGAGAAG  GGGCACGUGCAGAA            G  CU           C   ||||||||  ||||||||||||||            |  ||   ACCUCUUU  CUCGUGCACGUCUU            U  GU           A CA        CC              CCACUAUAUAUA --  AUACUAUAUAC
Stem-loop sequence	UGGAGAAGCAGGGCACGUGCAGAAAGUGCUUGAAUUGGUGCCACAUAUAUCAUAUGUAUAUAUAUCACCUUCUGCACGUGCUCCCUUUCUCCAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017779128.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   |*=|||||||||||||||||| targets:903   UUUACGUGCCCUGCUUCUCCA   923 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum NAC domain-containing protein 100-like (LOC108476796), transcript variant X1, mRNA	NAC domain-containing protein 100-like(LOC108476796)	coding protein	psRNATarget
XM_017779129.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   |*=|||||||||||||||||| targets:952   UUUACGUGCCCUGCUUCUCCA   972 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum NAC domain-containing protein 100-like (LOC108476796), transcript variant X2, mRNA	NAC domain-containing protein 100-like(LOC108476796)	coding protein	psRNATarget
XM_017749510.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **=|||||||||||||||||| targets:889   CAUACGUGCCCUGCUUCUCCA   909 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum NAC domain-containing protein 100-like (LOC108451819), mRNA	NAC domain-containing protein 100-like(LOC108451819)	coding protein	psRNATarget
XM_017785192.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||= targets:748   AGCAAGUGCCCUGCUUCUCCG   768 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum NAC domain-containing protein 21/22-like (LOC108482087), mRNA	NAC domain-containing protein 21/22-like(LOC108482087)	coding protein	psRNATarget
XM_017754549.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*||||||||*||||||| targets:766   AGCAAGUGCCCUGAUUCUCCA   786 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum NAC domain-containing protein 21/22 (LOC108455964), mRNA	NAC domain-containing protein 21/22(LOC108455964)	coding protein	psRNATarget