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BaseInfo

ncRNA ID	novel_gar_miR6
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr4:47962222-47962296 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588;SRR1029586
Length	21
Mature sequence(if miRNA)	55 - UAGCCAAGGAUGACUUGCCGA - 75
Stem-loop(if miRNA)	--          UG          UC UC  CC  CC   UAGCCAAGGA  ACUUGCCGAC  U  CU  UC  A   ||||||||||  ||||||||||  |  ||  ||  U   AUCGGUUUCU  UGGACGGCUG  G  GA  AG  C AC          GU          CU GU  AU  UA
Stem-loop sequence	UAGCCAAGGAUGACUUGCCGACUCUUCCUCCUCCCAUCAUGAUAAGUGGUCGUCGGCAGGUUGUCUUUGGCUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017755461.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   |*||||||||||||||||||| targets:1773   UAGGCAAGUCAUCCUUGGCUA   1793 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum ankyrin repeat and SAM domain-containing protein 6 (LOC108456791), mRNA	ankyrin repeat and SAM domain-containing protein 6(LOC108456791)	coding protein	psRNATarget
XM_017771947.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   |||||||*||||||||||||* targets:845   UCGGCAACUCAUCCUUGGCUU   865 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108470590), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108470590)	coding protein	psRNATarget
XM_017790883.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   |||||||*||||||||||||* targets:1081   UCGGCAACUCAUCCUUGGCUU   1101 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-5-like (LOC108486690), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-5-like(LOC108486690)	coding protein	psRNATarget
XM_017790874.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   |||||||*||||||||||||* targets:1105   UCGGCAACUCAUCCUUGGCUU   1125 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-5-like (LOC108486690), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-5-like(LOC108486690)	coding protein	psRNATarget
XM_017771945.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   |||||||*||||||||||||* targets:1233   UCGGCAACUCAUCCUUGGCUU   1253 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108470590), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108470590)	coding protein	psRNATarget
XM_017771946.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   |||||||*||||||||||||* targets:1367   UCGGCAACUCAUCCUUGGCUU   1387 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108470590), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108470590)	coding protein	psRNATarget
XM_017771944.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   |||||||*||||||||||||* targets:2832   UCGGCAACUCAUCCUUGGCUU   2852 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108470590), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108470590)	coding protein	psRNATarget
XM_017761781.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   *||||||*||||||||||||* targets:1134   CCGGCAACUCAUCCUUGGCUU   1154 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108461829), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108461829)	coding protein	psRNATarget
XM_017761782.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   *||||||*||||||||||||* targets:1136   CCGGCAACUCAUCCUUGGCUU   1156 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108461829), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108461829)	coding protein	psRNATarget
XM_017761780.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   *||||||*||||||||||||* targets:1139   CCGGCAACUCAUCCUUGGCUU   1159 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108461829), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108461829)	coding protein	psRNATarget
XM_017757431.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||* targets:1282   GUGGGAAGUCAUCCUUGGCUC   1302 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-3-like (LOC108458146), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3-like(LOC108458146)	coding protein	psRNATarget
XM_017757432.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||* targets:1326   GUGGGAAGUCAUCCUUGGCUC   1346 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-3-like (LOC108458146), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3-like(LOC108458146)	coding protein	psRNATarget
XM_017791277.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||* targets:1425   AUGGGAAGUCAUCCUUGGCUC   1445 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-3 (LOC108487057), mRNA	nuclear transcription factor Y subunit A-3(LOC108487057)	coding protein	psRNATarget
XM_017757429.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||* targets:1505   GUGGGAAGUCAUCCUUGGCUC   1525 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-3-like (LOC108458146), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC108458146)	coding protein	psRNATarget
XM_017757430.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||* targets:1717   GUGGGAAGUCAUCCUUGGCUC   1737 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-3-like (LOC108458146), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3-like(LOC108458146)	coding protein	psRNATarget
XM_017757428.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||* targets:1719   GUGGGAAGUCAUCCUUGGCUC   1739 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-3-like (LOC108458146), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC108458146)	coding protein	psRNATarget
XM_017747542.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAU   1   ***||*||||||||||||||= targets:1007   CACGCUAGUCAUCCUUGGCUG   1027 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108450089 (LOC108450089), mRNA	uncharacterized LOC108450089(LOC108450089)	coding protein	psRNATarget