Search result

BaseInfo

ncRNA ID	ath-miRf10940-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - UACUCGACAAGGGGGUCGAGUGG - NA
Stem-loop(if miRNA)	UG         AAGG      A   GCGU    G    -G   GAGCUGAGGAUACUCGACCAGGGGGUCGAGUAGAUG GAAG  AUACUCGAC    GGGUCG GUG    CAUC AGUA  CCU                                    G ||||  |||||||||    |||||| |||    |||| ||||  |||                                    G CUUC  UAUGAGCUG    UCCAGC CAC    GUAG UCGU  UAU                                    A     UG         GUGG      A   ----    G    GG   GAGCUGGUGGUUCAGCUCACUGAAACCUCGGUAAGA
Stem-loop sequence	GAAGUGAUACUCGACAAGGGGGUCGAGUGGCGUCAUCGAGUAGCCUGAGCUGAGGAUACUCGACCAGGGGGUCGAGUAGAUGGGAAGAAUGGCUCCAAAGUCACUCGACUUGGUGGUCGAGUAUGGUGCUGGAUGCACACGACCUGGUGGUCGAGUAUGUCUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   ||||||||||||||*|||||||| targets:90   CCACUCGACCCCCUGGUCGAGUA   112 Target Full Sequence	1.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   ||||||||||||||*|||||||| targets:230   CCACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   |=||||||||||||*|||||||| targets:181   CUACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   ||||||||||||||*|||||||| targets:230   CCACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   |=||||||||||||*|||||||| targets:181   CUACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   ||||||||||||||*|||||||| targets:124   CCACUCGACCCCCUGGUCGAGUA   146 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   =|||||||||*|||||||||||| targets:263   UCACUCGACCACCUUGUCGAGUA   285 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   ||||||||||||||*|||||||| targets:499   CCACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   =|||||||||*|||||||||||| targets:638   UCACUCGACCACCUUGUCGAGUA   660 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   ||||||||||||||*|||||||| targets:499   CCACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   =|||||||||*|||||||||||| targets:638   UCACUCGACCACCUUGUCGAGUA   660 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   =|||||||||||||*|||||||| targets:1571   UCACUCGACCCCCUGGUCGAGUA   1593 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   ==||||||||||||*|||||||| targets:308   UUACUCGACCCCCUGGUCGAGUA   330 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   ==||||*|||||||*|||||||| targets:301   UUACUCAACCCCCUGGUCGAGUA   323 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   ==||||*|||||||*|||||||| targets:301   UUACUCAACCCCCUGGUCGAGUA   323 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:23   GGUGAGCUGGGGGAACAGCUCAU   1   ==||*|||||||||*|||||||| targets:583   UUACYCGACCCCCUGGUCGAGUA   605 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget