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BaseInfo

ncRNA ID novel_egu_miR909
Species Elaeis guineensis
Class miRNA
Genome position Chr6:16244361-16244421 [+]
Reference genome EG5
Source SRR5189964
Length 24
Mature sequence(if miRNA) 1 - AAAUGAAGCCGGCACUGGGUUUGC - 24
Stem-loop(if miRNA) --         C    CU        C   A
  AAAUGAAGC GGCA  GGGUUUGC GGC U
  ||||||||| ||||  |||||||| |||
  UUUACUUCG CCGU  CCCAAACG UCG A
AA         A    AC        -   A
Stem-loop sequence AAAUGAAGCCGGCACUGGGUUUGCCGGCAUAAGCUGCAAACCCCAUGCCAGCUUCAUUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JO091873.1
ncRNA:24   CGUUUGGGU---CACGGCCGAAGUAAA   1
  *|=**||||---|||||||||||||||
targets:437   CCGUUCCCAUUUGUGCCGGCUUCAUUU   463

3.0 TSA: Elaeis guineensis isotig04619.Elguifruit mRNA sequence NA coding protein psRNATarget
JO091874.1
ncRNA:24   CGUUUGGGU---CACGGCCGAAGUAAA   1
  *|=**||||---|||||||||||||||
targets:437   CCGUUCCCAUUUGUGCCGGCUUCAUUU   463

3.0 TSA: Elaeis guineensis isotig04620.Elguifruit mRNA sequence NA coding protein psRNATarget
GBSV01008437.1
ncRNA:24   CGUUUGGGU---CACGGCCGAAGUAAA   1
  *|=**||||---|||||||||||||||
targets:1110   CCGUUCCCAUUUGUGCCGGCUUCAUUU   1136

3.0 TSA: Elaeis guineensis CL2924.Contig4_All transcribed RNA sequence NA coding protein psRNATarget
XM_010924583.1
ncRNA:24   CGUUUGGGU---CACGGCCGAAGUAAA   1
  *|=**||||---|||||||||||||||
targets:1210   CCGUUCCCAUUUGUGCCGGCUUCAUUU   1236

3.0 PREDICTED: Elaeis guineensis cyclic dof factor 1-like (LOC105046087), mRNA NA coding protein psRNATarget