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BaseInfo

ncRNA ID novel_egu_miR903
Species Elaeis guineensis
Class miRNA
Genome position Chr6:38662352-38662454 [+]
Reference genome EG5
Source SRR5189964
Length 24
Mature sequence(if miRNA) 80 - GUGUUGAGCUCUGAUUUUUGGCAU - 103
Stem-loop(if miRNA) ---G      A U         C   G  -------       AAGGAA        U
    CAAAGA C GGGCUCAGC ACU GA       GGUGGGG      GAUCUUCU G
    |||||| | ||||||||| ||| ||       |||||||      |||||||| A
    GUUUUU G CUCGAGUUG UGA CU       UCGCUCC      UUAGAAGG U
UACG      A U         -   G  GUCCUAG       -----G        A
Stem-loop sequence GCAAAGAACUGGGCUCAGCCACUGGAGGUGGGGAAGGAAGAUCUUCUUGAUAGGAAGAUUGCCUCGCUGAUCCUGUCGAGUGUUGAGCUCUGAUUUUUGGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010929823.1
ncRNA:24   UACGGUUUUUAGUCUCGAGUUGUG   1
  ||||=||||||||||||||||=||
targets:3230   AUGCUAAAAAUCAGAGCUCAAUAC   3253

1.5 PREDICTED: Elaeis guineensis probable LRR receptor-like serine/threonine-protein kinase At4g26540 (LOC105049982), mRNA NA coding protein psRNATarget
GBSV01031305.1
ncRNA:24   UACG-GUUUUUAGUCUCGAGUUGUG   1
  =|*|-|||||||||||||*|||||*
targets:102   GUUCACAAAAAUCAGAGCACAACAG   126

2.5 TSA: Elaeis guineensis Unigene13138_All transcribed RNA sequence NA coding protein psRNATarget
XM_010932910.2
ncRNA:24   UACG-GUUUUUAGUCUCGAGUUGUG   1
  =|*|-|||||||||||||*|||||*
targets:1085   GUUCACAAAAAUCAGAGCACAACAG   1109

2.5 PREDICTED: Elaeis guineensis uncharacterized protein At3g49720 (LOC105052176), transcript variant X3, mRNA NA coding protein psRNATarget