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BaseInfo

ncRNA ID	ath-miRf10938-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - ACUCGACCAGGGGGUCGAGUG - NA
Stem-loop(if miRNA)	GG            AUCAUC  G AACCUGAGCUGAGGAUACUCGGCCA ACUCGACCA  GGGUCGAGUGGC      GA U                         G |||||||||  ||||||||||||      || | UGAGCUGGU  UUCAGCUCACUG      CC U                         G          GG            ---AAA  - CGGUAAGAAGGGUAGAUGAACUGGG
Stem-loop sequence	ACUCGACCAGGGGGUCGAGUGGCAUCAUCGAGUAACCUGAGCUGAGGAUACUCGGCCAGGGGGUCAAGUAGAUGGGAAGAAUGGCUCCAAAGUCACUCGACUUGGUGGUCGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   ||||||||||||||||||||| targets:91   CACUCGACCCCCUGGUCGAGU   111 Target Full Sequence	0.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   ||||||||||||||||||||| targets:231   CACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   =|||||||||||||||||||| targets:182   UACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   ||||||||||||||||||||| targets:231   CACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   =|||||||||||||||||||| targets:182   UACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   ||||||||||||||||||||| targets:125   CACUCGACCCCCUGGUCGAGU   145 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   ||||||||||||||||||||| targets:500   CACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   ||||||||||||||||||||| targets:500   CACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   ||||||||||||||||||||| targets:1572   CACUCGACCCCCUGGUCGAGU   1592 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   =|||||||||||||||||||| targets:309   UACUCGACCCCCUGGUCGAGU   329 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   =||||*||||||||||||||| targets:302   UACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   =||||*||||||||||||||| targets:302   UACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   =||*||||||||||||||||| targets:584   UACYCGACCCCCUGGUCGAGU   604 Target Full Sequence	1.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   =|||||||||||*|||||||| targets:137   UACUCGACCCCCAGGUCGAGU   157 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   =|||||||||||*|||||||| targets:137   UACUCGACCCCCAGGUCGAGU   157 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   =|||||||||||*|||||||| targets:188   UACUCGACCCCCAGGUCGAGU   208 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   |||||||||||*||||||||| targets:490   CACUCGACCCCGUGGUCGAGU   510 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   |||||||||||*||||||||| targets:536   CACUCGACCCCAUGGUCGAGU   556 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   ||||||||||||*|||||||| targets:1105   CACUCGACCCCCAGGUCGAGU   1125 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   |||||||||||*||||||||| targets:1210   CACUCGACCCCGUGGUCGAGU   1230 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:21   GUGAGCUGGGGGACCAGCUCA   1   =|||=||||||||||||*||| targets:143   UACUUGACCCCCUGGUCUAGU   163 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget