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BaseInfo

ncRNA ID novel_egu_miR863
Species Elaeis guineensis
Class miRNA
Genome position Chr10:1291840-1292037 [-]
Reference genome EG5
Source SRR3042542
Length 24
Mature sequence(if miRNA) 1 - AAAGUCAUAAUUUGAUCGUAGGAU - 24
Stem-loop(if miRNA) --     A               C          AA  AU    A   UC     -UAA       -A   A  AA A      UA     -       U
  CCUGC GUCAAAUUAUGACUU CUGCACAGUA  AA  CAUA UUU  UUACA    GUUAUAA  GAG GA  G UAUUUU  UCGUU GAAAAUU A
  ||||| ||||||||||||||| ||||||||||  ||  |||| |||  |||||    |||||||  ||| ||  | ||||||  ||||| ||||||| U
  GGAUG UAGUUUAAUACUGAA GAUGUGUUGU  UU  GUAU GAA  GGUGU    CAGUAUU  UUC CU  C GUAAAA  AGUAA UUUUUAA A
UA     C               A          CA  CG    C   UC     UCUA       CC   C  CC C      GC     A       A
Stem-loop sequence CCUGCAGUCAAAUUAUGACUUCCUGCACAGUAAAAAAUCAUAAUUUUCUUACAUAAGUUAUAAAGAGAGAAAGAUAUUUUUAUCGUUGAAAAUUUAUAAAAUUUUUAAAUGACGAAAAUGCCCCUCCCUUCCUUAUGACAUCUUGUGGCUAAGCUAUGGCUUACUGUUGUGUAGAAAGUCAUAAUUUGAUCGUAGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010916187.1
ncRNA:24   UAGGAUGCUAGUUUAAUACUGAAA   1
  ||=||||||||||||||||||||*
targets:688   AUUCUACGAUCAAAUUAUGACUUC   711

1.0 PREDICTED: Elaeis guineensis subtilisin-like protease SBT1.5 (LOC105039875), mRNA NA coding protein psRNATarget