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BaseInfo

ncRNA ID	ath-miR835-5p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:28544454-28544853 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	331 - UUCUUGCAUAUGUUCUUUAUC - 351
Stem-loop(if miRNA)	UGCUCGAUUCU     UAGAAAUUCUGGUCAUCUUUGUGUUUAGGCUUUUUCUUGCAUAUGUUCUUUAUCUCUAUUGAUUGAUAUUGUUCAAUGAGCAACAUACUUUUCUCUUCUACCUGGAUUUGUUUGAUGGUUUUAAGAACUCUGUUCUUUUUGACGUUUUACCCAACAAUAUAACUUCUGUUGUAGUCAUCUUCUGCUGC            UCAGA                                                                                                                                                                                            A            |||||            GAAAC                                                                                                                                                                                            A ----------C     ACAAAUGUUGAGAAAGAACGCAUAGAAGAGGUAGAAAUAUCUAUCAAUAAAAGUUGCUAGUCGUAGGAUAAGAGAUUAUGGACCUAAACACUGCAAAAAGGGGUUGUUACAAUGAAGAUAAAAUCACUACAAGAGAACGUUGGGUAGCUCUUUCCCAAAUUAGAACGUACUAUUCGAAACACCUACCC
Stem-loop sequence	UGCUCGAUUCUUCAGAUAGAAAUUCUGGUCAUCUUUGUGUUUAGGCUUUUUCUUGCAUAUGUUCUUUAUCUCUAUUGAUUGAUAUUGUUCAAUGAGCAACAUACUUUUCUCUUCUACCUGGAUUUGUUUGAUGGUUUUAAGAACUCUGUUCUUUUUGACGUUUUACCCAACAAUAUAACUUCUGUUGUAGUCAUCUUCUGCUGCAACCCAUCCACAAAGCUUAUCAUGCAAGAUUAAACCCUUUCUCGAUGGGUUGCAAGAGAACAUCACUAAAAUAGAAGUAACAUUGUUGGGGAAAAACGUCACAAAUCCAGGUAUUAGAGAAUAGGAUGCUGAUCGUUGAAAAUAACUAUCUAUAAAGAUGGAGAAGAUACGCAAGAAAGAGUUGUAAACACAAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_103844.3	ncRNA:21   CUAUUUCUUGUAUACGUUCUU   1   **||=|||||||||||||||| targets:941   AUUAGAGAACAUAUGCAAGAA   961 Target Full Sequence	1.0	Arabidopsis thaliana Homeodomain-like superfamily protein mRNA	Homeodomain-like superfamily protein(AT1G49560)	coding protein	psRNATarget
NM_001333390.1	ncRNA:21   CUAUUUCUUGUAUACGUUCUU   1   **||=|||||||||||||||| targets:926   AUUAGAGAACAUAUGCAAGAA   946 Target Full Sequence	1.0	Arabidopsis thaliana Homeodomain-like superfamily protein mRNA	Homeodomain-like superfamily protein(AT1G49560)	coding protein	psRNATarget
BX814978.1	ncRNA:21   CUAUUUCUUGUAUACGUUCUU   1   **||=|||||||||||||||| targets:838   AUUAGAGAACAUAUGCAAGAA   858 Target Full Sequence	1.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS21ZD11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK221631.1	ncRNA:21   CUAUUUCUUGUAUACGUUCUU   1   **||=|||||||||||||||| targets:808   AUUAGAGAACAUAUGCAAGAA   828 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-96-G04	NA	coding protein	psRNATarget
AY086694.1	ncRNA:21   CUAUUUCUUGUAUACGUUCUU   1   **||=|||||||||||||||| targets:802   AUUAGAGAACAUAUGCAAGAA   822 Target Full Sequence	1.0	Arabidopsis thaliana clone 2686 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_128771.4	ncRNA:21   CUAUUUCUUGUAUACGUUCUU   1   *||*||||||=|||||||||| targets:1328   UAUCAAGAACGUAUGCAAGAA   1348 Target Full Sequence	2.5	Arabidopsis thaliana heat-shock protein 70T-2 (HSP70T-2), mRNA	heat-shock protein 70T-2(HSP70T-2)	coding protein	psRNATarget
NM_179852.3	ncRNA:21   CUAUUUCUUGUAUACGUUCUU   1   *||*||||||=|||||||||| targets:1315   UAUCAAGAACGUAUGCAAGAA   1335 Target Full Sequence	2.5	Arabidopsis thaliana heat-shock protein 70T-2 (HSP70T-2), mRNA	heat-shock protein 70T-2(HSP70T-2)	coding protein	psRNATarget
AY088895.1	ncRNA:21   CUAUUUCUUGUAUACGUUCUU   1   *||*||||||=|||||||||| targets:1278   UAUCAAGAACGUAUGCAAGAA   1298 Target Full Sequence	2.5	Arabidopsis thaliana clone 98979 mRNA, complete sequence	NA	coding protein	psRNATarget
BX820577.1	ncRNA:21   CUAUUUCUUGUAUACGUUCUU   1   *||*||||||=|||||||||| targets:1291   UAUCAAGAACGUAUGCAAGAA   1311 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH49ZH05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY123990.1	ncRNA:21   CUAUUUCUUGUAUACGUUCUU   1   *||*||||||=|||||||||| targets:1194   UAUCAAGAACGUAUGCAAGAA   1214 Target Full Sequence	2.5	Arabidopsis thaliana At2g32120/F22D22.13 mRNA, complete cds	NA	coding protein	psRNATarget
BT001079.1	ncRNA:21   CUAUUUCUUGUAUACGUUCUU   1   *||*||||||=|||||||||| targets:1113   UAUCAAGAACGUAUGCAAGAA   1133 Target Full Sequence	2.5	Arabidopsis thaliana At2g32120/F22D22.13 mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).