Search result

BaseInfo

ncRNA ID novel_egu_miR848
Species Elaeis guineensis
Class miRNA
Genome position Chr6:10796405-10796550 [-]
Reference genome EG5
Source SRR3042548
Length 24
Mature sequence(if miRNA) 123 - AGAAACUGGAGAGAGAAGGUAGAG - 146
Stem-loop(if miRNA)      --CU            ---U         -------------------------            UUUUUCUCUCUUCUUC
AGAAA    GGAGAGAGAAGG    AGAGAGAGA                         AGAAAGAGAAAA                U
|||||    ||||||||||||    |||||||||                         ||||||||||||
UCUUU    UUUCUUUUUUCC    UCUUUUUCU                         UCUUUCUCUUUU                U
     UUCU            UUUU         UUUCUUUUUCCUUUUUUAUUUUUUC            UAUUUUUAUUUUUUUU
Stem-loop sequence AGAAACUGGAGAGAGAAGGUAGAGAGAGAAGAAAGAGAAAAUUUUUCUCUCUUCUUCUUUUUUUUUUAUUUUUAUUUUUCUCUUUCUCUUUUUUAUUUUUUCCUUUUUCUUUUCUUUUUCUUUUUCCUUUUUUCUUUUCUUUUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019854012.1
ncRNA:24   GAGAUGGAAGAGAGAGGUCAAAGA   1
  *||**|||||||||||=||||||*
targets:2251   GUCAUCCUUCUCUCUCUAGUUUCC   2274

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105055185 (LOC105055185), mRNA NA coding protein psRNATarget