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BaseInfo

ncRNA ID novel_egu_miR847
Species Elaeis guineensis
Class miRNA
Genome position Chr6:7601859-7601922 [+]
Reference genome EG5
Source SRR3042548
Length 24
Mature sequence(if miRNA) 41 - AGAUUUGGUUUGGGCUUGAUUGGA - 64
Stem-loop(if miRNA) --    -     G                   
  CAAU GGGCU AGAUUAAGUCUAAUUGAAUA
  |||| ||||| |||||||||||||||||||U
  GUUA UUCGG UUUGGUUUAGAUUAAUUUAA
AG    G     G                   
Stem-loop sequence CAAUGGGCUGAGAUUAAGUCUAAUUGAAUAUAAUUUAAUUAGAUUUGGUUUGGGCUUGAUUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JO089280.1
ncRNA:24   AGGUUAGUU-CGGGUUUGGUUUAGA   1
  |=|=*||||-||||||||||||||*
targets:300   UUCGUUCAAAGCCCAAACCAAAUCC   324

3.0 TSA: Elaeis guineensis isotig02028.Elguifruit mRNA sequence NA coding protein psRNATarget
JO089279.1
ncRNA:24   AGGUUAGUU-CGGGUUUGGUUUAGA   1
  |=|=*||||-||||||||||||||*
targets:300   UUCGUUCAAAGCCCAAACCAAAUCC   324

3.0 TSA: Elaeis guineensis isotig02027.Elguifruit mRNA sequence NA coding protein psRNATarget