ncRNA ID | novel_egu_miR841 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr5:33290370-33290480 [-] |
Reference genome | EG5 |
Source | SRR3042548 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UAGGCAAGAGACCUCUAAAAU - 21 |
Stem-loop(if miRNA) |
--       A             UG     U AC    AAAUCAAUUC     A   UG   UUUGGAG UCUCUUGCCUACG  UCAAG C  CCCA          AUAGU UUA  C   ||||||| |||||||||||||  ||||| |  ||||          ||||| |||   AAAUCUC AGAGAACGGAUGU  AGUUC G  GGGU          UAUCA AGU  C UA       C             GU     U GA    -------AUA     A   CA |
Stem-loop sequence | UUUGGAGAUCUCUUGCCUACGUGUCAAGUCACCCCAAAAUCAAUUCAUAGUAUUAUGCCACUGAAACUAUAUAUGGGAGGUCUUGAUGUGUAGGCAAGAGACCUCUAAAAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GBSV01006736.1 |
|
3.0 | TSA: Elaeis guineensis CL2296.Contig3_All transcribed RNA sequence | NA | coding protein | psRNATarget | |||||||||
JO094746.1 |
|
3.0 | TSA: Elaeis guineensis isotig07511.Elguifruit mRNA sequence | NA | coding protein | psRNATarget | |||||||||
XM_010919869.2 |
|
3.0 | PREDICTED: Elaeis guineensis dynamin-related protein 5A (LOC105042581), mRNA | NA | coding protein | psRNATarget |