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BaseInfo

ncRNA ID novel_egu_miR841
Species Elaeis guineensis
Class miRNA
Genome position Chr5:33290370-33290480 [-]
Reference genome EG5
Source SRR3042548
Length 21
Mature sequence(if miRNA) 1 - UAGGCAAGAGACCUCUAAAAU - 21
Stem-loop(if miRNA) --       A             UG     U AC    AAAUCAAUUC     A   UG
  UUUGGAG UCUCUUGCCUACG  UCAAG C  CCCA          AUAGU UUA  C
  ||||||| |||||||||||||  ||||| |  ||||          ||||| |||
  AAAUCUC AGAGAACGGAUGU  AGUUC G  GGGU          UAUCA AGU  C
UA       C             GU     U GA    -------AUA     A   CA
Stem-loop sequence UUUGGAGAUCUCUUGCCUACGUGUCAAGUCACCCCAAAAUCAAUUCAUAGUAUUAUGCCACUGAAACUAUAUAUGGGAGGUCUUGAUGUGUAGGCAAGAGACCUCUAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01006736.1
ncRNA:21   UAAAAUCUCCAGAGAACGGAU   1
  ****|||*|||||||||||||
targets:96   CCCAUAGUGGUCUCUUGCCUA   116

3.0 TSA: Elaeis guineensis CL2296.Contig3_All transcribed RNA sequence NA coding protein psRNATarget
JO094746.1
ncRNA:21   UAAAAUCUCCAGAGAACGGAU   1
  ****|||*|||||||||||||
targets:295   CCCAUAGUGGUCUCUUGCCUA   315

3.0 TSA: Elaeis guineensis isotig07511.Elguifruit mRNA sequence NA coding protein psRNATarget
XM_010919869.2
ncRNA:21   UAAAAUCUCCAGAGAACGGAU   1
  ****|||*|||||||||||||
targets:300   CCCAUAGUGGUCUCUUGCCUA   320

3.0 PREDICTED: Elaeis guineensis dynamin-related protein 5A (LOC105042581), mRNA NA coding protein psRNATarget