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BaseInfo

ncRNA ID novel_egu_miR839
Species Elaeis guineensis
Class miRNA
Genome position Chr4:39428529-39428703 [-]
Reference genome EG5
Source SRR3042548
Length 21
Mature sequence(if miRNA) 155 - AGGGAGGGAGAGGAAGAGGAA - 175
Stem-loop(if miRNA) --                  -  -     -AA   ------    A    G          C         C           -   C UUC
  AGGGAGGGAGAGGAAGAG GA AGAGG   GGG      AGAG GAGA AAGGGGGGGG UUUCAAGUC CCAUCUCCUCC GCC C   U
  |||||||||||||||||| || |||||   |||      |||| |||| |||||||||| ||||||||| ||||||||||| ||| |   U
  UUCCUUUCUUUCCUUUUC CU UCUCC   CCC      UCUC CUUU UUUCCCUCCC AAAGUUCGG GGUAGAGGAGG CGG G   U
UC                  U  C     CAA   CCCGCU    C    G          U         A           U   C UAC
Stem-loop sequence AGGGAGGGAGAGGAAGAGGAAGAGGAAGGGAGAGAGAGAGAAGGGGGGGGCUUUCAAGUCCCCAUCUCCUCCGCCCCUUCUUUCAUGCGGCUGGAGGAGAUGGAGGCUUGAAAUCCCUCCCUUUGUUUCCCUCUUCGCCCCCCAACCCUCUCUCUCUUUUCCUUUCUUUCCUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010943284.2
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  |||||||||||||||||||||
targets:87   UUCCUCUUCCUCUCCCUCCCU   107

0.0 PREDICTED: Elaeis guineensis probable UDP-arabinose 4-epimerase 3 (LOC105059828), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010943285.2
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  |||||||||||||||||||||
targets:87   UUCCUCUUCCUCUCCCUCCCU   107

0.0 PREDICTED: Elaeis guineensis probable UDP-arabinose 4-epimerase 3 (LOC105059828), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019855631.1
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  |||||||||||||||||||||
targets:87   UUCCUCUUCCUCUCCCUCCCU   107

0.0 PREDICTED: Elaeis guineensis probable UDP-arabinose 4-epimerase 3 (LOC105059828), transcript variant X4, mRNA NA coding protein psRNATarget
XM_010943286.2
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  |||||||||||||||||||||
targets:87   UUCCUCUUCCUCUCCCUCCCU   107

0.0 PREDICTED: Elaeis guineensis probable UDP-arabinose 4-epimerase 3 (LOC105059828), transcript variant X3, mRNA NA coding protein psRNATarget
GBSV01019390.1
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  ||||||||||||||||||=||
targets:220   UUCCUCUUCCUCUCCCUCUCU   240

1.5 TSA: Elaeis guineensis Unigene1218_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01021636.1
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  *||||||||||||||||=|||
targets:122   CUCCUCUUCCUCUCCCUUCCU   142

1.5 TSA: Elaeis guineensis Unigene3464_All transcribed RNA sequence NA coding protein psRNATarget
XM_010941057.2
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  *||||||||||||||||=|||
targets:118   CUCCUCUUCCUCUCCCUUCCU   138

1.5 PREDICTED: Elaeis guineensis uncharacterized LOC105058200 (LOC105058200), transcript variant X1, mRNA NA coding protein psRNATarget
GBSV01009624.1
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  **|||||||||||||=|||||
targets:122   GCCCUCUUCCUCUCCUUCCCU   142

1.5 TSA: Elaeis guineensis CL3378.Contig3_All transcribed RNA sequence NA coding protein psRNATarget
XM_010931127.2
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  ||=||||*|||||||||||||
targets:390   UUUCUCUCCCUCUCCCUCCCU   410

2.0 PREDICTED: Elaeis guineensis uncharacterized LOC105050904 (LOC105050904), mRNA NA coding protein psRNATarget
XM_010943284.2
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  ||||*|||||||||||||=||
targets:225   UUCCCCUUCCUCUCCCUCUCU   245

2.5 PREDICTED: Elaeis guineensis probable UDP-arabinose 4-epimerase 3 (LOC105059828), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010943285.2
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  ||||*|||||||||||||=||
targets:225   UUCCCCUUCCUCUCCCUCUCU   245

2.5 PREDICTED: Elaeis guineensis probable UDP-arabinose 4-epimerase 3 (LOC105059828), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019855631.1
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  ||||*|||||||||||||=||
targets:225   UUCCCCUUCCUCUCCCUCUCU   245

2.5 PREDICTED: Elaeis guineensis probable UDP-arabinose 4-epimerase 3 (LOC105059828), transcript variant X4, mRNA NA coding protein psRNATarget
XM_010943286.2
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  ||||*|||||||||||||=||
targets:225   UUCCCCUUCCUCUCCCUCUCU   245

2.5 PREDICTED: Elaeis guineensis probable UDP-arabinose 4-epimerase 3 (LOC105059828), transcript variant X3, mRNA NA coding protein psRNATarget
GBSV01016731.1
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  |||=|||||||||=|||||||
targets:43   UUCUUCUUCCUCUUCCUCCCU   63

2.5 TSA: Elaeis guineensis CL6292.Contig1_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01016732.1
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  |||=|||||||||=|||||||
targets:43   UUCUUCUUCCUCUUCCUCCCU   63

2.5 TSA: Elaeis guineensis CL6292.Contig2_All transcribed RNA sequence NA coding protein psRNATarget
XM_010906334.2
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  |||||||||||||=||||||*
targets:23   UUCCUCUUCCUCUUCCUCCCC   43

2.5 PREDICTED: Elaeis guineensis protein arv1 homolog (LOC105032014), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010906335.2
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  |||||||||||||=||||||*
targets:23   UUCCUCUUCCUCUUCCUCCCC   43

2.5 PREDICTED: Elaeis guineensis protein arv1 homolog (LOC105032014), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010932993.2
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  *||=|||||||||||||||=|
targets:69   CUCUUCUUCCUCUCCCUCCUU   89

2.5 PREDICTED: Elaeis guineensis zinc transporter 8-like (LOC105052242), mRNA NA coding protein psRNATarget
XM_010938665.1
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  ||=|||||||||||||||*||
targets:29   UUUCUCUUCCUCUCCCUCACU   49

2.5 PREDICTED: Elaeis guineensis omega-amidase, chloroplastic (LOC105056460), mRNA NA coding protein psRNATarget
GBSV01010559.1
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  ||=|||||||||||||||*||
targets:27   UUUCUCUUCCUCUCCCUCACU   47

2.5 TSA: Elaeis guineensis CL3738.Contig2_All transcribed RNA sequence NA coding protein psRNATarget
XM_010911056.2
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  |||||||*|||=|||||||||
targets:109   UUCCUCUCCCUUUCCCUCCCU   129

2.5 PREDICTED: Elaeis guineensis actin-depolymerizing factor 7 (LOC105035488), mRNA NA coding protein psRNATarget
XM_010918788.2
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  ||||||*||||||||=|||||
targets:164   UUCCUCGUCCUCUCCUUCCCU   184

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105041766 (LOC105041766), transcript variant X1, mRNA NA coding protein psRNATarget
GBSV01044817.1
ncRNA:21   AAGGAGAAGGAGAGGGAGGGA   1
  |||||||*|||=|||||||||
targets:131   UUCCUCUCCCUUUCCCUCCCU   151

2.5 TSA: Elaeis guineensis Unigene26658_All transcribed RNA sequence NA coding protein psRNATarget
XM_010917748.2
ncRNA:21   AAGGAGAAGGAG-AGGGAGGGA   1
  *|||||||||||-|||||||||
targets:300   CUCCUCUUCCUCCUCCCUCCCU   321

3.0 PREDICTED: Elaeis guineensis uncharacterized LOC105040978 (LOC105040978), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010917749.2
ncRNA:21   AAGGAGAAGGAG-AGGGAGGGA   1
  *|||||||||||-|||||||||
targets:308   CUCCUCUUCCUCCUCCCUCCCU   329

3.0 PREDICTED: Elaeis guineensis uncharacterized LOC105040978 (LOC105040978), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019855600.1
ncRNA:21   AAGGAGAAGGAGAG-GGAGGGA   1
  *|||||||||||||-|||||||
targets:209   CUCCUCUUCCUCUCUCCUCCCU   230

3.0 PREDICTED: Elaeis guineensis peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic (LOC105059854), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010943324.2
ncRNA:21   AAGGAGAAGGAGAG-GGAGGGA   1
  *|||||||||||||-|||||||
targets:151   CUCCUCUUCCUCUCUCCUCCCU   172

3.0 PREDICTED: Elaeis guineensis peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic (LOC105059854), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010923351.2
ncRNA:21   AAGGAGAAGGAGAGGGAG-GGA   1
  *|||||||||||||||||-|||
targets:200   CUCCUCUUCCUCUCCCUCGCCU   221

3.0 PREDICTED: Elaeis guineensis uncharacterized LOC105045179 (LOC105045179), mRNA NA coding protein psRNATarget
GBSV01013785.1
ncRNA:21   AAGGAGAAGGAGAGGGAG-GGA   1
  *|||||||||||||||||-|||
targets:191   CUCCUCUUCCUCUCCCUCGCCU   212

3.0 TSA: Elaeis guineensis CL5023.Contig2_All transcribed RNA sequence NA coding protein psRNATarget
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