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BaseInfo

ncRNA ID novel_egu_miR830
Species Elaeis guineensis
Class miRNA
Genome position Chr3:56341949-56342074 [-]
Reference genome EG5
Source SRR3042548
Length 22
Mature sequence(if miRNA) 105 - UGAAGAGGUGGAGAGUGGAAUG - 126
Stem-loop(if miRNA) --   A    U      UG   U C           -           -     -UU G  A  G
  UGA GAGG GGAGAG  GAA G AGCCGAGGAUG GCUUGCCGGCA UUAGC   U GA GG A
  ||| |||| ||||||  ||| | ||||||||||| ||||||||||| |||||   | || || C
  ACU CUUC UCUCUC  CUU C UCGGUUCCUGU UGAACGGCCGU GGUUG   G CU CC U
GC   -    U      GU   C A           A           U     CUU G  -  G
Stem-loop sequence UGAAGAGGUGGAGAGUGGAAUGCAGCCGAGGAUGGCUUGCCGGCAUUAGCUUUGGAAGGGACUGCCUCGGUUCGUUGGUUGCCGGCAAGUAUGUCCUUGGCUACCUUCUGCUCUCUUCUUCUCACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01028517.1
ncRNA:21   UAAGGUGAGAGGUGGAGAAGU   1
  *||||*=||||||||||||||
targets:1   CUUCCCUUCUCCACCUCUUCA   21

2.0 TSA: Elaeis guineensis Unigene10350_All transcribed RNA sequence NA coding protein psRNATarget
XM_010921977.2
ncRNA:22   GUAAGGUGAGAGGUGGAGAAGU   1
  ***|||=|*|||||||||||||
targets:301   GCCUCCGCCCUCCACCUCUUCA   322

2.0 PREDICTED: Elaeis guineensis pentatricopeptide repeat-containing protein At1g33350 (LOC105044169), mRNA NA coding protein psRNATarget
XM_010924433.2
ncRNA:22   GUAAGGUGAGAGGUGGAGAAGU   1
  |**|||*|||||||=|||||||
targets:114   CCGUCCUCUCUCCAUCUCUUCA   135

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105045974 (LOC105045974), mRNA NA coding protein psRNATarget
GBSV01010576.1
ncRNA:22   GUAAGGUGAGAGGUGGAGAAGU   1
  ||*|||||*|||||||||*|||
targets:1138   CAGUCCACGCUCCACCUCCUCA   1159

2.5 TSA: Elaeis guineensis CL3746.Contig1_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01010577.1
ncRNA:22   GUAAGGUGAGAGGUGGAGAAGU   1
  ||*|||||*|||||||||*|||
targets:1120   CAGUCCACGCUCCACCUCCUCA   1141

2.5 TSA: Elaeis guineensis CL3746.Contig2_All transcribed RNA sequence NA coding protein psRNATarget
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