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BaseInfo

ncRNA ID novel_egu_miR829
Species Elaeis guineensis
Class miRNA
Genome position Chr3:56606697-56606792 [-]
Reference genome EG5
Source SRR3042548
Length 24
Mature sequence(if miRNA) 1 - UUGUUUCGAUUGGGAGGAGGGCAG - 24
Stem-loop(if miRNA) --        UU           U         C    CUGAGAG   GC
  GCCCUCCU  CGAUCGAAACA GGUUCCUGG UUCA       UUA  A
  ||||||||  ||||||||||| ||||||||| ||||       |||
  CGGGAGGA  GUUAGCUUUGU CCGGGGAUU AAGU       AAU  A
GA        GG           U         -    ---AAAA   AA
Stem-loop sequence GCCCUCCUUUCGAUCGAAACAUGGUUCCUGGCUUCACUGAGAGUUAGCAAAAUAAAAAAUGAAUUAGGGGCCUUGUUUCGAUUGGGAGGAGGGCAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010918613.2
ncRNA:24   GACGGGAGGAGGGUUAGCUUUGUU   1
  =|*|||*|||||||||*|||||||
targets:181   UUUCCCCCCUCCCAAUAGAAACAA   204

2.5 PREDICTED: Elaeis guineensis acetyl-CoA carboxylase 1 (LOC105041644), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019849316.1
ncRNA:24   GACGGGAGGAGGGUUAGCUUUGUU   1
  =|*|||*|||||||||*|||||||
targets:182   UUUCCCCCCUCCCAAUAGAAACAA   205

2.5 PREDICTED: Elaeis guineensis acetyl-CoA carboxylase 1 (LOC105041644), transcript variant X2, mRNA NA coding protein psRNATarget