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BaseInfo

ncRNA ID novel_egu_miR824
Species Elaeis guineensis
Class miRNA
Genome position Chr1:52181286-52181374 [-]
Reference genome EG5
Source SRR3042548
Length 24
Mature sequence(if miRNA) 1 - AGGCUGAUUGUAAUAGGAUGGUUG - 24
Stem-loop(if miRNA) --      -     A   UG   ---AG       --A     U   U
  AUCGUU UGUUG AGU  GCU     AUCUAUC   UCGGC AGA U
  |||||| ||||| |||  |||     |||||||   ||||| |||
  UGGUAG AUAAU UUA  CGG     UGGGUGG   AGUUG UCU G
GU      G     G   GU   AAAUA       AGG     -   G
Stem-loop sequence AUCGUUUGUUGAAGUUGGCUAGAUCUAUCAUCGGCUAGAUUGGUCUGUUGAGGAGGUGGGUAUAAAGGCUGAUUGUAAUAGGAUGGUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01046806.1
ncRNA:24   GUUGGUAGGAUAAUGUUAGUCGGA   1
  ||=|||||||||||=|||||||||
targets:52   CAGCCAUCCUAUUAUAAUCAGCCU   75

1.5 TSA: Elaeis guineensis Unigene28647_All transcribed RNA sequence NA coding protein psRNATarget