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BaseInfo

ncRNA ID novel_egu_miR812
Species Elaeis guineensis
Class miRNA
Genome position Chr11:8613117-8613197 [+]
Reference genome EG5
Source SRR3042548
Length 21
Mature sequence(if miRNA) 1 - UUUCAAAAUGAAGUCGGCAAG - 21
Stem-loop(if miRNA) --                                   AAU
  UUUCAAAAUGAAGUCGGCAAGUGGUUUGCCGACUU   U
  |||||||||||||||||||||||||||||||||||   A
  AAAGUUUUGCUUCAGCCGUUCACCAAACGGUUGAA   A
AA                                   GUG
Stem-loop sequence UUUCAAAAUGAAGUCGGCAAGUGGUUUGCCGACUUAAUUAAGUGAAGUUGGCAAACCACUUGCCGACUUCGUUUUGAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01011317.1
ncRNA:21   GAACGGCUGAAGUAAAACUUU   1
  ****=||||||||||||||||
targets:812   AACAUCGACUUCAUUUUGAAA   832

3.0 TSA: Elaeis guineensis CL4042.Contig3_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01011316.1
ncRNA:21   GAACGGCUGAAGUAAAACUUU   1
  ****=||||||||||||||||
targets:812   AACAUCGACUUCAUUUUGAAA   832

3.0 TSA: Elaeis guineensis CL4042.Contig2_All transcribed RNA sequence NA coding protein psRNATarget