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BaseInfo

ncRNA ID novel_egu_miR800
Species Elaeis guineensis
Class miRNA
Genome position Chr16:2981253-2981334 [+]
Reference genome EG5
Source SRR3042548
Length 22
Mature sequence(if miRNA) 61 - UGCUCCAAUAGGGUAGAAUGGU - 82
Stem-loop(if miRNA) --AU         -             GC   A      UU
    UUCUACCCU UUGGAGCACUGUA  AAA ACCAUA  U
    ||||||||| |||||||||||||  ||| ||||||  U
    AAGAUGGGA AACCUCGUGGCAU  UUU UGGUAU  C
UGGU         U             AC   A      UG
Stem-loop sequence AUUUCUACCCUUUGGAGCACUGUAGCAAAAACCAUAUUUUCGUUAUGGUAUUUCAUACGGUGCUCCAAUAGGGUAGAAUGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019846408.1
ncRNA:22   UGGUAAGAUGGGAUAACCUCGU   1
  *|=||||||*|||||||||||*
targets:1314   CCUAUUCUAACCUAUUGGAGCC   1335

2.5 PREDICTED: Elaeis guineensis protein farnesyltransferase subunit beta (LOC105047991), transcript variant X3, mRNA NA coding protein psRNATarget
XM_010927163.2
ncRNA:22   UGGUAAGAUGGGAUAACCUCGU   1
  *|=||||||*|||||||||||*
targets:1317   CCUAUUCUAACCUAUUGGAGCC   1338

2.5 PREDICTED: Elaeis guineensis protein farnesyltransferase subunit beta (LOC105047991), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019846402.1
ncRNA:22   UGGUAAGAUGGGAUAACCUCGU   1
  *|=||||||*|||||||||||*
targets:1338   CCUAUUCUAACCUAUUGGAGCC   1359

2.5 PREDICTED: Elaeis guineensis protein farnesyltransferase subunit beta (LOC105047991), transcript variant X1, mRNA NA coding protein psRNATarget