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BaseInfo

ncRNA ID	novel_egu_miR788
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr14:9219225-9219365 [+]
Reference genome	EG5
Source	SRR3042548
Length	21
Mature sequence(if miRNA)	1 - UUCGCGCUAAAGAAUGAUUGA - 21
Stem-loop(if miRNA)	----U     CU    A      GA  UUU    CAC    -------      -A    AUC    --CU G    GAU      UCGCG  AAAG AUGAUU  UC   UUCU   GGCA       UCAACC  UUGA   GCAU    U CACA   C      |||||  |||| ||||||  ||   ||||   ||||       ||||||  ||||   ||||    | ||||      AGUGC  UUUC UACUAA  AG   AAGA   CCGU       AGUUGG  AACU   CGUA    A GUGU   U UAAAC     --    C      --  -UU    -AA    UGCAUGC      CA    -AA    UUAU G    AUA
Stem-loop sequence	UUCGCGCUAAAGAAUGAUUGAUCUUUUUCUCACGGCAUCAACCAUUGAAUCGCAUCUUGCACAGAUCUAUAUGUGGAUAUUAUGCAAUCAAACGGUUGACGUACGUUGCCAAAGAAUUGAAAUCAUCCUUUCGUGACAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010937782.2	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   **|||||||||||=||||||| targets:86   CAAAUCAUUCUUUGGCGCGAA   106 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis transcription factor PIF1-like (LOC105055793), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010937783.2	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   **|||||||||||=||||||| targets:86   CAAAUCAUUCUUUGGCGCGAA   106 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis transcription factor PIF1-like (LOC105055793), transcript variant X2, mRNA	NA	coding protein	psRNATarget
GBSV01009932.1	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   |*|||||||||||*||||||| targets:72   UGAAUCAUUCUUUCGCGCGAA   92 Target Full Sequence	1.5	TSA: Elaeis guineensis CL3494.Contig2_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01009933.1	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   |*|||||||||||*||||||| targets:573   UGAAUCAUUCUUUCGCGCGAA   593 Target Full Sequence	1.5	TSA: Elaeis guineensis CL3494.Contig3_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010930879.2	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   |*|||||||||||*||||||| targets:48   UGAAUCAUUCUUUUGCGCGAA   68 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis enhancer of rudimentary homolog (LOC105050745), mRNA	NA	coding protein	psRNATarget
GBSV01047028.1	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   **|||||||||||*||||||| targets:59   CGAAUCAUUCUUUCGCGCGAA   79 Target Full Sequence	1.5	TSA: Elaeis guineensis Unigene28869_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010937713.2	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   **|||||||||||*||||||| targets:162   CGAAUCAUUCUUUCGCGCGAA   182 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis uncharacterized LOC105055750 (LOC105055750), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010919314.2	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   ||=||||||||||=||||||| targets:1872   UCGAUCAUUCUUUGGCGCGAA   1892 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis protein indeterminate-domain 7-like (LOC105042196), mRNA	NA	coding protein	psRNATarget
XM_019850299.1	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   ||=||||||||||*||||||| targets:267   UCGAUCAUUCUUUCGCGCGAA   287 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis oxysterol-binding protein-related protein 3A (LOC105044388), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010922264.2	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   ||=||||||||||*||||||| targets:263   UCGAUCAUUCUUUCGCGCGAA   283 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis oxysterol-binding protein-related protein 3A (LOC105044388), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019852876.1	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   ||=||||||||||*||||||| targets:188   UCGAUCAUUCUUUCGCGCGAA   208 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105052056 (LOC105052056), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_019852873.1	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   ||=||||||||||*||||||| targets:184   UCGAUCAUUCUUUCGCGCGAA   204 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105052056 (LOC105052056), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019847654.1	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   *|=||||||||||*||||||| targets:681   CCGAUCAUUCUUUCGCGCGAA   701 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis probable carboxylesterase 2 (LOC109505241), partial mRNA	NA	coding protein	psRNATarget
XM_010931701.2	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   *==||||||||||*||||||| targets:20   AUGAUCAUUCUUUCGCGCGAA   40 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis phosphopantothenoylcysteine decarboxylase (LOC105051327), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019852951.1	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   *==||||||||||*||||||| targets:92   AUGAUCAUUCUUUCGCGCGAA   112 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis phosphopantothenoylcysteine decarboxylase (LOC105051327), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019853242.1	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   |*=||||||||||*||||||| targets:110   UGGAUCAUUCUUUCGCGCGAA   130 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uracil phosphoribosyltransferase (LOC105052170), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010943873.2	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   |*||||*||||||=||||||| targets:11   UGAAUCCUUCUUUGGCGCGAA   31 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis protein EDS1B-like (LOC105060252), mRNA	NA	coding protein	psRNATarget
XM_010929840.2	ncRNA:21   AGUUAGUAAGAAAUCGCGCUU   1   |*||||*||||||*||||||| targets:92   UGAAUCCUUCUUUUGCGCGAA   112 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis putative BPI/LBP family protein At1g04970 (LOC105050003), mRNA	NA	coding protein	psRNATarget