Search result

BaseInfo

ncRNA ID	novel_egu_miR783
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr13:19091581-19091699 [+]
Reference genome	EG5
Source	SRR3042548
Length	21
Mature sequence(if miRNA)	99 - UCAAAGAUGGGCAAUGUGGUG - 119
Stem-loop(if miRNA)	--      CU       CA        A   ---     -   ---U     A     GG  C   CCACGU  CCCAUCU  GAAAUGGA GGC   UCCCU CAU    UUUGG AGCUG  GC G   ||||||  |||||||  |||||||| |||   ||||| |||    ||||| |||||  ||   GGUGUA  GGGUAGA  CUUUGCCU CCG   GGGGA GUG    AAACC UCGAU  UG U GU      AC       AA        C   UGU     U   UCAC     G     GG  C
Stem-loop sequence	CCACGUCUCCCAUCUCAGAAAUGGAAGGCUCCCUCAUUUUUGGAAGCUGGGGCCGUCGUGGUAGCUGCCAAACACUGUGUAGGGGUGUGCCCUCCGUUUCAAAGAUGGGCAAUGUGGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JO091386.1	ncRNA:21   GUGGUGUAACGGGUAGAAACU   1   |||||||*||||||||||*|| targets:38   CACCACAAUGCCCAUCUUAGA   58 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig04132.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
XM_010936531.2	ncRNA:21   GUGGUGUAACGGGUAGAAACU   1   **||||*|||=|||||||||| targets:699   GUCCACUUUGUCCAUCUUUGA   719 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis cysteine protease ATG4B (LOC105054901), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010936533.2	ncRNA:21   GUGGUGUAACGGGUAGAAACU   1   **||||*|||=|||||||||| targets:704   GUCCACUUUGUCCAUCUUUGA   724 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis cysteine protease ATG4B (LOC105054901), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019854232.1	ncRNA:21   GUGGUGUAACGGGUAGAAACU   1   **||||*|||=|||||||||| targets:660   GUCCACUUUGUCCAUCUUUGA   680 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis cysteine protease ATG4B (LOC105054901), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019854233.1	ncRNA:21   GUGGUGUAACGGGUAGAAACU   1   **||||*|||=|||||||||| targets:704   GUCCACUUUGUCCAUCUUUGA   724 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis cysteine protease ATG4B (LOC105054901), transcript variant X4, mRNA	NA	coding protein	psRNATarget
GBSV01018257.1	ncRNA:21   GUGGUGUAACGGGUAGAAACU   1   **||||*|||=|||||||||| targets:640   GUCCACUUUGUCCAUCUUUGA   660 Target Full Sequence	2.5	TSA: Elaeis guineensis Unigene85_All transcribed RNA sequence	NA	coding protein	psRNATarget