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BaseInfo

ncRNA ID	novel_egu_miR776
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr1:20361942-20362122 [+]
Reference genome	EG5
Source	SRR3042548
Length	21
Mature sequence(if miRNA)	1 - UUCGCACGAAAGAAGGAUUCA - 21
Stem-loop(if miRNA)	--    C   A                 C   GC  A           G     -  -UGCUG   ----      --CA     CUACCAACC   UUCG ACG AAGAAGGAUUCAUCUUC UUC  AC AAUUCACUGUU GAUCA CC      CAC    GGAUCU    AAAUG         C   |||| ||| ||||||||||||||||| |||  || ||||||||||| ||||| ||      |||    ||||||    |||||         U   AAGC UGC UUCUUUCUAAGUGGAGG AAG  UG UUAGGUGGCAA CUAGU GG      GUG    UCUAGG    UUUAC         C GA    A   C                 A   AA  C           A     A  UAAAUA   AAUC      CAUG     CUACUUAUU
Stem-loop sequence	UUCGCACGAAAGAAGGAUUCAUCUUCCUUCGCACAAAUUCACUGUUGGAUCACCUGCUGCACGGAUCUCAAAAUGCUACCAACCCUCUUAUUCAUCCAUUUGUACGGAUCUCUAAGUGAUAAAUGGAUGAUCAAACGGUGGAUUCGUAAGAAAGGAGGUGAAUCUUUCUUCCGUACGAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010942765.2	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   ||||||||*|||||||||||| targets:28   UGAAUCCUACUUUCGUGCGAA   48 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis acid phosphatase 1 (LOC105059467), mRNA	NA	coding protein	psRNATarget
GBSV01032931.1	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   |*||||||*|||||||||||| targets:53   UAAAUCCUACUUUCGUGCGAA   73 Target Full Sequence	1.5	TSA: Elaeis guineensis Unigene14764_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010931643.2	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   |*||||||*|||||||||||| targets:91   UAAAUCCUACUUUCGUGCGAA   111 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis geranylgeranyl transferase type-2 subunit alpha 1 (LOC105051289), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010931641.2	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   |*||||||*|||||||||||| targets:93   UAAAUCCUACUUUCGUGCGAA   113 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis geranylgeranyl transferase type-2 subunit alpha 1 (LOC105051289), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019846481.1	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   |*|=||*|||||||||||||| targets:35   UCAGUCAUUCUUUCGUGCGAA   55 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis cinnamoyl-CoA reductase 2-like (LOC105032899), mRNA	NA	coding protein	psRNATarget
GBSV01009932.1	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   ||||||*||||||||*||||| targets:72   UGAAUCAUUCUUUCGCGCGAA   92 Target Full Sequence	2.5	TSA: Elaeis guineensis CL3494.Contig2_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01009933.1	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   ||||||*||||||||*||||| targets:573   UGAAUCAUUCUUUCGCGCGAA   593 Target Full Sequence	2.5	TSA: Elaeis guineensis CL3494.Contig3_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_019849818.1	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   |||*|||||||||||*||||| targets:67   UGAUUCCUUCUUUCGAGCGAA   87 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis zinc finger MYND domain-containing protein 15 (LOC105042930), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010916676.2	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   ||||||*|||||||||||*|| targets:2   UGAAUCAUUCUUUCGUGCUAA   22 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis probable sodium/metabolite cotransporter BASS2, chloroplastic (LOC105040242), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010920301.2	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   |||*|||||||||||*||||| targets:67   UGAUUCCUUCUUUCGAGCGAA   87 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis zinc finger MYND domain-containing protein 15 (LOC105042930), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010920300.2	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   |||*|||||||||||*||||| targets:67   UGAUUCCUUCUUUCGAGCGAA   87 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis zinc finger MYND domain-containing protein 15 (LOC105042930), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010916675.2	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   ||||||*|||||||||||*|| targets:2   UGAAUCAUUCUUUCGUGCUAA   22 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis probable sodium/metabolite cotransporter BASS2, chloroplastic (LOC105040242), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01047028.1	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   *|||||*||||||||*||||| targets:59   CGAAUCAUUCUUUCGCGCGAA   79 Target Full Sequence	2.5	TSA: Elaeis guineensis Unigene28869_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010937713.2	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   *|||||*||||||||*||||| targets:162   CGAAUCAUUCUUUCGCGCGAA   182 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105055750 (LOC105055750), transcript variant X3, mRNA	NA	coding protein	psRNATarget
GBSV01036820.1	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   |*||||*|||||||*|||||| targets:264   UCAAUCAUUCUUUCAUGCGAA   284 Target Full Sequence	2.5	TSA: Elaeis guineensis Unigene18655_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010935170.1	ncRNA:21   ACUUAGGAAGAAAGCACGCUU   1   |*||||*||||||||||*||| targets:1009   UUAAUCAUUCUUUCGUGGGAA   1029 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105053855 (LOC105053855), mRNA	NA	coding protein	psRNATarget