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BaseInfo

ncRNA ID novel_egu_miR773
Species Elaeis guineensis
Class miRNA
Genome position Chr1:1257243-1257381 [-]
Reference genome EG5
Source SRR3042548
Length 24
Mature sequence(if miRNA) 116 - AGAACUGACGAGGUCUGGCGGUUG - 139
Stem-loop(if miRNA) --A      AC        GC     UA  G GACCAGGGGAGUCGACCGACCCUAGGUCGGUAGCCAGCC
   GAACUG  GAGGUCUG  GGUUG  CG C                                       G
   ||||||  ||||||||  |||||  || |
   CUUGGC  CUCCAGAC  CCGGC  GA G                                       A
UGA      -C        UA     -U  - UGUAUUUUGAGCGGCUGGUUGCCUCCUCGGGCUGCGGUG
Stem-loop sequence AGAACUGACGAGGUCUGGCGGUUGUACGGCGACCAGGGGAGUCGACCGACCCUAGGUCGGUAGCCAGCCGAGUGGCGUCGGGCUCCUCCGUUGGUCGGCGAGUUUUAUGUGAGUCGGCCAUCAGACCUCCCGGUUCAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01017552.1
ncRNA:24   GUUGGCGGUCUGGAGCAGUCAAGA   1
  ||||||||||||||||||||||||
targets:79   CAACCGCCAGACCUCGUCAGUUCU   102

0.0 TSA: Elaeis guineensis CL6671.Contig1_All transcribed RNA sequence NA coding protein psRNATarget