Search result

BaseInfo

ncRNA ID	novel_egu_miR768
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr1:11711678-11711821 [-]
Reference genome	EG5
Source	SRR3042548
Length	24
Mature sequence(if miRNA)	1 - AACAUGUGGUAUCAGAGCGAGGUU - 24
Stem-loop(if miRNA)	--         A                                              A   --------   CAU   CCUCGCUCU AUACCACAUGUUAGGACCGUAGCCCCUAACCAACUUUCCAAAAGGC AAU        GCC   U   ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||        |||   GGAGCGAGA UAUGGUGUACAAUUUUGGCAUCGGGGAUUGGUUGAAGGGUUUUCCG UUA        CGG   G UU         C                                              A   UUUUAGAG   AGG
Stem-loop sequence	CCUCGCUCUAAUACCACAUGUUAGGACCGUAGCCCCUAACCAACUUUCCAAAAGGCAAAUGCCCAUUGGGAGGCGAGAUUUUAUUAGCCUUUUGGGAAGUUGGUUAGGGGCUACGGUUUUAACAUGUGGUAUCAGAGCGAGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GBSV01017255.1	ncRNA:24   UUGGAGCGAGACUAUGGUGUACAA   1   *=|||=|||||||||||||*|||| targets:611   CGCCUUGCUCUGAUACCACUUGUU   634 Target Full Sequence	2.5	TSA: Elaeis guineensis CL6532.Contig1_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010940019.2	ncRNA:24   UUGG--AGCGAGACUAUGGUGUACAA   1   ||==--|||=*|*||||||||||||| targets:1298   AAUUCAUCGUCCCGAUACCACAUGUU   1323 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis probable protein phosphatase 2C 33 (LOC105057417), mRNA	NA	coding protein	psRNATarget