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BaseInfo

ncRNA ID	ath-miR415
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:27987016-27987125 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	3 - AACAGAGCAGAAACAGAACAU - 23
Stem-loop(if miRNA)	AC     A     --       AUAUUCUC    UUUUUUUGUGGCAAAAGUAA AGA  AGAGC GAAAC  AGAACAU        UGUC                    A |||  ||||| |||||  |||||||        ||||                    U UCU  UCUCG UUUUG  UCUUGUA        UACC                    G    CU     A     GU       -----AGC    AUUUUCUCAACAGAAGAGCG
Stem-loop sequence	AGAACAGAGCAGAAACAGAACAUAUAUUCUCUGUCUUUUUUUGUGGCAAAAGUAAAUGGCGAGAAGACAACUCUUUUACCAUCGAAUGUUCUUGGUUUUAGCUCUUCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_101579.4	ncRNA:21   UACAA-GACAAAGACGAGACAA   1   =||||-|||||||||||||||| targets:884   GUGUUGCUGUUUCUGCUCUGUU   905 Target Full Sequence	2.0	Arabidopsis thaliana glutathione S-transferase TAU 25 (GSTU25), mRNA	glutathione S-transferase TAU 25(GSTU25)	coding protein	psRNATarget
AK118907.1	ncRNA:21   UACAA-GACAAAGACGAGACAA   1   =||||-|||||||||||||||| targets:759   GUGUUGCUGUUUCUGCUCUGUU   780 Target Full Sequence	2.0	Arabidopsis thaliana At1g17180 mRNA for putative glutathione transferase, complete cds, clone: RAFL21-25-C02	NA	coding protein	psRNATarget
NM_100302.5	ncRNA:21   UACAAGACAAAGACGAGACAA   1   |||||||||||||*||||||* targets:2655   AUGUUCUGUUUCUUCUCUGUC   2675 Target Full Sequence	2.5	Arabidopsis thaliana Leucine-rich repeat protein kinase family protein mRNA	Leucine-rich repeat protein kinase family protein(AT1G04210)	coding protein	psRNATarget
AY099732.1	ncRNA:21   UACAAGACAAAGACGAGACAA   1   |||||||||||||*||||||* targets:2625   AUGUUCUGUUUCUUCUCUGUC   2645 Target Full Sequence	2.5	Arabidopsis thaliana unknown protein (At1g04210) mRNA, complete cds	NA	coding protein	psRNATarget
BT010461.1	ncRNA:21   UACAAGACAAAGACGAGACAA   1   |||||||||||||*||||||* targets:2334   AUGUUCUGUUUCUUCUCUGUC   2354 Target Full Sequence	2.5	Arabidopsis thaliana At1g04210 gene, complete cds	NA	coding protein	psRNATarget
NM_117107.5	ncRNA:21   UACAAGACAAAGACGAGACAA   1   *||*|||||||=||||||||| targets:367   CUGCUCUGUUUUUGCUCUGUU   387 Target Full Sequence	2.5	Arabidopsis thaliana Protein kinase superfamily protein mRNA	Protein kinase superfamily protein(AT4G10390)	coding protein	psRNATarget
BX826909.1	ncRNA:21   UACAAGACAAAGACGAGACAA   1   *||*|||||||=||||||||| targets:253   CUGCUCUGUUUUUGCUCUGUU   273 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB74ZH07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX827842.1	ncRNA:21   UACAAGACAAAGACGAGACAA   1   *||*|||||||=||||||||| targets:158   CUGCUCUGUUUUUGCUCUGUU   178 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH26ZG07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY093195.1	ncRNA:21   UACAAGACAAAGACGAGACAA   1   *||*|||||||=||||||||| targets:205   CUGCUCUGUUUUUGCUCUGUU   225 Target Full Sequence	2.5	Arabidopsis thaliana putative protein kinase (At4g10390) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001336238.1	ncRNA:21   UACAAGACAAAGACGAGACAA   1   =*|||||*|||=||||||||| targets:529   GGGUUCUAUUUUUGCUCUGUU   549 Target Full Sequence	2.5	Arabidopsis thaliana potassium transporter 1 (KT1), mRNA	potassium transporter 1(KT1)	coding protein	psRNATarget
NM_116528.6	ncRNA:21   UACAAGACAAAGACGAGACAA   1   |||*|||||||||*||||||| targets:2116   AUGCUCUGUUUCUUCUCUGUU   2136 Target Full Sequence	2.5	Arabidopsis thaliana oxidoreductase, 2OG-Fe(II) oxygenase family protein mRNA	oxidoreductase, 2OG-Fe(II) oxygenase family protein(AT4G02940)	coding protein	psRNATarget
AY093043.1	ncRNA:21   UACAAGACAAAGACGAGACAA   1   |||*|||||||||*||||||| targets:1926   AUGCUCUGUUUCUUCUCUGUU   1946 Target Full Sequence	2.5	Arabidopsis thaliana unknown protein (At4g02940) mRNA, complete cds	NA	coding protein	psRNATarget
AY128924.1	ncRNA:21   UACAAGACAAAGACGAGACAA   1   |||*|||||||||*||||||| targets:1771   AUGCUCUGUUUCUUCUCUGUU   1791 Target Full Sequence	2.5	Arabidopsis thaliana unknown protein (At4g02940) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001334724.1	ncRNA:21   UACAAGACAAAGACGAGACAA   1   **|||||*||||||=|||||| targets:248   UGGUUCUUUUUCUGUUCUGUU   268 Target Full Sequence	2.5	Arabidopsis thaliana Plant regulator RWP-RK family protein partial mRNA	Plant regulator RWP-RK family protein(AT1G76350)	coding protein	psRNATarget

Reference

1	PMID:15345049 "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"; Wang XJ, Reyes JL, Chua NH, Gaasterland T; Genome Biol. 5:R65(2004).
2	PMID:16669754 "MicroRNAS and their regulatory roles in plants"; Jones-Rhoades MW, Bartel DP, Bartel B; Annu Rev Plant Biol. 57:19-53(2006).