Search result

BaseInfo

ncRNA ID novel_egu_miR761
Species Elaeis guineensis
Class miRNA
Genome position Chr10:21495044-21495174 [+]
Reference genome EG5
Source SRR3042548
Length 24
Mature sequence(if miRNA) 108 - GACGGUCGAUGUCGCGAAAGAAGG - 131
Stem-loop(if miRNA) --              UA          UG   AAC --  CG UUCCAGAUCUGUGUGGACGAUGG
  UUCUUUCGCGACAU  ACCGUUGGAU  CGU   G  CC  C                       A
  ||||||||||||||  ||||||||||  |||   |  ||  |                       A
  AAGAAAGCGCUGUA  UGGCAGCCUA  GCG   C  GA  G                       A
GG              GC          GA   GAA GU  -- GAAGUUUCGUGAGGAUGGACAAG
Stem-loop sequence UUCUUUCGCGACAUUAACCGUUGGAUUGCGUAACGCCCGCUUCCAGAUCUGUGUGGACGAUGGAAAGAACAGGUAGGAGUGCUUUGAAGGAGUGCAAGGCGAGAUCCGACGGUCGAUGUCGCGAAAGAAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01029617.1
ncRNA:24   GGAAGAAAGCGCUGUAGCUGGCAG   1
  =|||||||||||||||||*|||||
targets:270   UCUUCUUUCGCGACAUCGCCCGUC   293

1.5 TSA: Elaeis guineensis Unigene11450_All transcribed RNA sequence NA coding protein psRNATarget
XM_010914430.2
ncRNA:24   GGAAGAAAGCGCUGUAGCUGGCAG   1
  *||||||||||||||||*|||||=
targets:86   ACUUCUUUCGCGACAUCAACCGUU   109

2.5 PREDICTED: Elaeis guineensis probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (LOC105038581), mRNA NA coding protein psRNATarget