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BaseInfo

ncRNA ID ath-miRf10924-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - UGAGGCGUAUCAGGAGGUAGU - NA
Stem-loop(if miRNA) U        U   G G UAG      U
 GAGGCGUA CAG A G   UGUUCU G
 |||||||| ||| | |   ||||||
 CUUUGUAU GUU U U   ACAGGG G
A        -   G G UUA      U
Stem-loop sequence UGAGGCGUAUCAGGAGGUAGUGUUCUUGGUGGGACAAUUUGUGUUGUAUGUUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BX827821.1
ncRNA:21   UGAUGGAGGACUAUGCGGAGU   1
  ||*||||=|||||||||||||
targets:947   ACCACCUUCUGAUACGCCUCA   967

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH24ZF06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT010740.1
ncRNA:21   UGAUGGAGGACUAUGCGGAGU   1
  ||*||||=|||||||||||||
targets:1578   ACCACCUUCUGAUACGCCUCA   1598

2.0 Arabidopsis thaliana At4g31200 gene, complete cds NA coding protein psRNATarget
AK229583.1
ncRNA:21   UGAUGGAGGACUAUGCGGAGU   1
  ||*||||=|||||||||||||
targets:1704   ACCACCUUCUGAUACGCCUCA   1724

2.0 Arabidopsis thaliana mRNA for predicted protein, complete cds, clone: RAFL19-20-M01 NA coding protein psRNATarget
NM_001342064.1
ncRNA:21   UGAUGGAGGACUAUGCGGAGU   1
  ||*||||=|||||||||||||
targets:1715   ACCACCUUCUGAUACGCCUCA   1735

2.0 Arabidopsis thaliana SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein mRNA SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein(AT4G31200) coding protein psRNATarget
NM_119269.4
ncRNA:21   UGAUGGAGGACUAUGCGGAGU   1
  ||*||||=|||||||||||||
targets:1732   ACCACCUUCUGAUACGCCUCA   1752

2.0 Arabidopsis thaliana SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein mRNA SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein(AT4G31200) coding protein psRNATarget
NM_202921.2
ncRNA:21   UGAUGGAGGACUAUGCGGAGU   1
  ||*||||=|||||||||||||
targets:1946   ACCACCUUCUGAUACGCCUCA   1966

2.0 Arabidopsis thaliana SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein mRNA SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein(AT4G31200) coding protein psRNATarget