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BaseInfo

ncRNA ID novel_egu_miR728
Species Elaeis guineensis
Class miRNA
Genome position Chr4:36834795-36834897 [-]
Reference genome EG5
Source SRR3042547
Length 21
Mature sequence(if miRNA) 83 - ACCUGAGCCGUUGGAUCGCGU - 103
Stem-loop(if miRNA) --    G                  U   CG -------C UG UG      GAA
  ACCU AGCCGUUGGAUCGCGUUU GCA  G        G  C  UGGAUG   G
  |||| |||||||||||||||||| |||  |        |  |  ||||||   A
  UGGA UUGGCAACCUAGCGCAAA CGU  C        C  G  GCUUAU   A
GC    G                  -   AU AAAAUUUU GU GU      AAA
Stem-loop sequence ACCUGAGCCGUUGGAUCGCGUUUUGCACGGCGUGCUGUGGAUGGAAGAAAAAUAUUCGUGGUGCUUUUAAAACUAUGCAAACGCGAUCCAACGGUUGAGGUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JO088560.1
ncRNA:21   UGCGCUAGGUUGCCGAGUCCA   1
  *||*||||||||||||||*||
targets:80   CCGGGAUCCAACGGCUCACGU   100

2.5 TSA: Elaeis guineensis isotig01309.Elguifruit mRNA sequence NA coding protein psRNATarget