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BaseInfo

ncRNA ID novel_egu_miR725
Species Elaeis guineensis
Class miRNA
Genome position Chr4:39428528-39428704 [-]
Reference genome EG5
Source SRR3042547
Length 22
Mature sequence(if miRNA) 156 - GAGGGAGGGAGAGGAAGAGGAA - 177
Stem-loop(if miRNA) --                   -  -     -AA   ------    A    G          C         C           -   C UUC
  GAGGGAGGGAGAGGAAGAG GA AGAGG   GGG      AGAG GAGA AAGGGGGGGG UUUCAAGUC CCAUCUCCUCC GCC C   U
  ||||||||||||||||||| || |||||   |||      |||| |||| |||||||||| ||||||||| ||||||||||| ||| |   U
  CUUCCUUUCUUUCCUUUUC CU UCUCC   CCC      UCUC CUUU UUUCCCUCCC AAAGUUCGG GGUAGAGGAGG CGG G   U
CU                   U  C     CAA   CCCGCU    C    G          U         A           U   C UAC
Stem-loop sequence GAGGGAGGGAGAGGAAGAGGAAGAGGAAGGGAGAGAGAGAGAAGGGGGGGGCUUUCAAGUCCCCAUCUCCUCCGCCCCUUCUUUCAUGCGGCUGGAGGAGAUGGAGGCUUGAAAUCCCUCCCUUUGUUUCCCUCUUCGCCCCCCAACCCUCUCUCUCUUUUCCUUUCUUUCCUUCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010943284.2
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  ||||||||||||||||||||||
targets:87   UUCCUCUUCCUCUCCCUCCCUC   108

0.0 PREDICTED: Elaeis guineensis probable UDP-arabinose 4-epimerase 3 (LOC105059828), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010943285.2
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  ||||||||||||||||||||||
targets:87   UUCCUCUUCCUCUCCCUCCCUC   108

0.0 PREDICTED: Elaeis guineensis probable UDP-arabinose 4-epimerase 3 (LOC105059828), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019855631.1
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  ||||||||||||||||||||||
targets:87   UUCCUCUUCCUCUCCCUCCCUC   108

0.0 PREDICTED: Elaeis guineensis probable UDP-arabinose 4-epimerase 3 (LOC105059828), transcript variant X4, mRNA NA coding protein psRNATarget
XM_010943286.2
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  ||||||||||||||||||||||
targets:87   UUCCUCUUCCUCUCCCUCCCUC   108

0.0 PREDICTED: Elaeis guineensis probable UDP-arabinose 4-epimerase 3 (LOC105059828), transcript variant X3, mRNA NA coding protein psRNATarget
GBSV01019390.1
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  ||||||||||||||||||=|||
targets:220   UUCCUCUUCCUCUCCCUCUCUC   241

1.5 TSA: Elaeis guineensis Unigene1218_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01009624.1
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  **|||||||||||||=||||||
targets:122   GCCCUCUUCCUCUCCUUCCCUC   143

1.5 TSA: Elaeis guineensis CL3378.Contig3_All transcribed RNA sequence NA coding protein psRNATarget
XM_010935952.2
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  ||=||||*=|||||||||||||
targets:686   UUUCUCUCUCUCUCCCUCCCUC   707

2.0 PREDICTED: Elaeis guineensis uncharacterized LOC105054449 (LOC105054449), mRNA NA coding protein psRNATarget
XM_010931127.2
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  ||=||||*|||||||||||||=
targets:390   UUUCUCUCCCUCUCCCUCCCUU   411

2.0 PREDICTED: Elaeis guineensis uncharacterized LOC105050904 (LOC105050904), mRNA NA coding protein psRNATarget
XM_010932993.2
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  *||=|||||||||||||||=||
targets:69   CUCUUCUUCCUCUCCCUCCUUC   90

2.5 PREDICTED: Elaeis guineensis zinc transporter 8-like (LOC105052242), mRNA NA coding protein psRNATarget
GBSV01021636.1
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  *||||||||||||||||=|||=
targets:122   CUCCUCUUCCUCUCCCUUCCUU   143

2.5 TSA: Elaeis guineensis Unigene3464_All transcribed RNA sequence NA coding protein psRNATarget
XM_010941057.2
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  *||||||||||||||||=|||=
targets:118   CUCCUCUUCCUCUCCCUUCCUU   139

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105058200 (LOC105058200), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010918788.2
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  ||||||*||||||||=||||||
targets:164   UUCCUCGUCCUCUCCUUCCCUC   185

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105041766 (LOC105041766), transcript variant X1, mRNA NA coding protein psRNATarget
GBSV01015693.1
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  |*|||||*||||||||||=|||
targets:949   UCCCUCUCCCUCUCCCUCUCUC   970

2.5 TSA: Elaeis guineensis CL5834.Contig1_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01015694.1
ncRNA:22   AAGGAGAAGGAGAGGGAGGGAG   1
  |*|||||*||||||||||=|||
targets:936   UCCCUCUCCCUCUCCCUCUCUC   957

2.5 TSA: Elaeis guineensis CL5834.Contig2_All transcribed RNA sequence NA coding protein psRNATarget
XM_010923351.2
ncRNA:22   AAGGAGAAGGAGAGGGAG-GGAG   1
  *|||||||||||||||||-||||
targets:200   CUCCUCUUCCUCUCCCUCGCCUC   222

3.0 PREDICTED: Elaeis guineensis uncharacterized LOC105045179 (LOC105045179), mRNA NA coding protein psRNATarget
GBSV01013785.1
ncRNA:22   AAGGAGAAGGAGAGGGAG-GGAG   1
  *|||||||||||||||||-||||
targets:191   CUCCUCUUCCUCUCCCUCGCCUC   213

3.0 TSA: Elaeis guineensis CL5023.Contig2_All transcribed RNA sequence NA coding protein psRNATarget
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