Search result

BaseInfo

ncRNA ID novel_egu_miR724
Species Elaeis guineensis
Class miRNA
Genome position Chr8:37789191-37789378 [+]
Reference genome EG5
Source SRR3042542
Length 24
Mature sequence(if miRNA) 1 - UUUGAAUGACGAAAAUACCUCUAU - 24
Stem-loop(if miRNA) --    A           ACC   -              A           U   - -     A           -A  AUAUUAUGAUAUUUUAUA
  UUUG AUGACGAAAAU   UCU AUUCUUUGAAAAAA UUAUGAUAUUU AUG C AUAUU UGAUAUCUUGC  UU                  G
  |||| |||||||||||   ||| |||||||||||||| ||||||||||| ||| | ||||| |||||||||||  ||
  AAAU UGCUGCUUUUA   AGA UAAGAAACUUUUUU AAUACUGUAAG UAC G UAUAA ACUGUAGGAUG  GG                  A
UA    A           -CA   A              -           C   A A     A           CA  UCUUUCAAUAUUAAAAAU
Stem-loop sequence UUUGAAUGACGAAAAUACCUCUAUUCUUUGAAAAAAAUUAUGAUAUUUUAUGCAUAUUAUGAUAUCUUGCAUUAUAUUAUGAUAUUUUAUAGAUAAAAAUUAUAACUUUCUGGACGUAGGAUGUCAAAAUAUAGACAUCGAAUGUCAUAAUUUUUUCAAAGAAUAAGAACAUUUUCGUCGUAUAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019853582.1
ncRNA:24   UAUCUCCAUAAAAGCAGUAAGUUU   1
  =*||=||*||||||||*|||||||
targets:8   GGAGGGGCAUUUUCGUAAUUCAAA   31

2.5 PREDICTED: Elaeis guineensis rop guanine nucleotide exchange factor 14 (LOC105053520), transcript variant X2, mRNA NA coding protein psRNATarget