Search result

BaseInfo

ncRNA ID ath-miRf10920-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - AACCGGAUUCUGGUUUGGUUA - NA
Stem-loop(if miRNA) UGCAUA   -       U            -AUG   UC
      GCA AACCGGA UCUGGUUUGGUU    UAA  C
      ||| ||||||| ||||||||||||    |||  A
      UGU UUGGUCU AGGCCAAACUAG    AUU  A
-----A   A       U            AUUA   UU
Stem-loop sequence UGCAUAGCAAACCGGAUUCUGGUUUGGUUAUGUAAUCCAAUUUUAAUUAGAUCAAACCGGAUUCUGGUUAUGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001334017.1
ncRNA:21   AUUGGUUUGGUCUUAGGCCAA   1
  *||||||||||*||||||||*
targets:67   AAACCAAACCAUAAUCCGGUA   87

2.5 Arabidopsis thaliana Ubiquitin-like superfamily protein (ATG8C), mRNA Ubiquitin-like superfamily protein(ATG8C) coding protein psRNATarget
NM_104884.5
ncRNA:21   AUUGGUUUGGUCUUAGGCCAA   1
  *||||||||||*||||||||*
targets:67   AAACCAAACCAUAAUCCGGUA   87

2.5 Arabidopsis thaliana Ubiquitin-like superfamily protein (ATG8C), mRNA Ubiquitin-like superfamily protein(ATG8C) coding protein psRNATarget
NM_001332814.1
ncRNA:21   AUUGGUUUGGUCUUAGGCCAA   1
  |=|*|||||||*|||||||||
targets:1564   UGAACAAACCAAAAUCCGGUU   1584

2.5 Arabidopsis thaliana myosin heavy chain-like protein mRNA myosin heavy chain-like protein(AT1G28410) coding protein psRNATarget
NM_102609.3
ncRNA:21   AUUGGUUUGGUCUUAGGCCAA   1
  |=|*|||||||*|||||||||
targets:1157   UGAACAAACCAAAAUCCGGUU   1177

2.5 Arabidopsis thaliana myosin heavy chain-like protein mRNA myosin heavy chain-like protein(AT1G28410) coding protein psRNATarget
BT011680.1
ncRNA:21   AUUGGUUUGGUCUUAGGCCAA   1
  |=|*|||||||*|||||||||
targets:1157   UGAACAAACCAAAAUCCGGUU   1177

2.5 Arabidopsis thaliana At1g28410 gene, complete cds NA coding protein psRNATarget
AK227881.1
ncRNA:21   AUUGGUUUGGUCUUAGGCCAA   1
  |=|*|||||||*|||||||||
targets:1104   UGAACAAACCAAAAUCCGGUU   1124

2.5 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL14-45-L04 NA coding protein psRNATarget