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BaseInfo

ncRNA ID novel_egu_miR711
Species Elaeis guineensis
Class miRNA
Genome position Chr2:94691-94736 [-]
Reference genome EG5
Source SRR3042547
Length 21
Mature sequence(if miRNA) 26 - UGAUUUGAUCAGGGGUUAGGU - 46
Stem-loop(if miRNA) --U    U             GU
   GAUU GAUCAGGGGUUAG  U
   |||| |||||||||||||
   UUAG UUAGUCCUUAAUU  U
GGU    U             GA
Stem-loop sequence UGAUUUGAUCAGGGGUUAGGUUUAGUUAAUUCCUGAUUUGAUUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01035246.1
ncRNA:21   UGGAUUGGGGACUAGUUUAGU   1
  =||*|||||||||||||||||
targets:49   GCCCAACCCCUGAUCAAAUCA   69

1.0 TSA: Elaeis guineensis Unigene17081_All transcribed RNA sequence NA coding protein psRNATarget
XM_010923727.2
ncRNA:21   UGGAUUGGGGACUAGUUUAGU   1
  **||*||||||||||||||||
targets:145   UGCUCACCCCUGAUCAAAUCA   165

1.0 PREDICTED: Elaeis guineensis UDP-glycosyltransferase 87A2-like (LOC105045451), mRNA NA coding protein psRNATarget
GBSV01044838.1
ncRNA:21   UGGAUUGGGGACUAGUUUAGU   1
  **||*||||||||||||||||
targets:136   UGCUCACCCCUGAUCAAAUCA   156

1.0 TSA: Elaeis guineensis Unigene26679_All transcribed RNA sequence NA coding protein psRNATarget
XM_019854924.1
ncRNA:21   UGGAUUGGGGACUAGUUUAGU   1
  |*||||*|||||||||||||=
targets:103   AACUAAACCCUGAUCAAAUCG   123

2.0 PREDICTED: Elaeis guineensis protein ALP1-like (LOC105056989), mRNA NA coding protein psRNATarget