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BaseInfo

ncRNA ID novel_egu_miR709
Species Elaeis guineensis
Class miRNA
Genome position Chr16:18192784-18192915 [-]
Reference genome EG5
Source SRR3042547
Length 24
Mature sequence(if miRNA) 109 - AGAGAGAAAAUGUAGAGAGAAGGU - 132
Stem-loop(if miRNA) --          U U          U                ----                    UU
  AGAGAGAAAA G AGAGAGAAGG AAAGAGAGGAAAGAGA    GAGAAAGGAGAGAGAGGAGA  U
  |||||||||| | |||||||||| ||||||||||||||||    ||||||||||||||||||||  U
  UCUUUUUUUU C UUUUUUUUCU UUUUUUUUCUUUUUCU    CUCUUUCUUUUUUUUCCUUU  C
UU          U -          U                UUUU                    CU
Stem-loop sequence AGAGAGAAAAUGUAGAGAGAAGGUAAAGAGAGGAAAGAGAGAGAAAGGAGAGAGAGGAGAUUUUCUCUUUCCUUUUUUUUCUUUCUCUUUUUCUUUUUCUUUUUUUUUUCUUUUUUUUCUUUUUUUUUCUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01047799.1
ncRNA:24   UGGAAGA-GAGAUGUAAAAGAGAGA   1
  =||||||-|||||||||||||||||
targets:73   GCCUUCUGCUCUACAUUUUCUCUCU   97

2.0 TSA: Elaeis guineensis Unigene29640_All transcribed RNA sequence NA coding protein psRNATarget