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BaseInfo

ncRNA ID novel_egu_miR708
Species Elaeis guineensis
Class miRNA
Genome position Chr16:20156406-20156486 [-]
Reference genome EG5
Source SRR3042547
Length 21
Mature sequence(if miRNA) 61 - UUUCAAAAUGAAGUCGGCAAG - 81
Stem-loop(if miRNA) --        UG                         AAU
  UUUCAAAA  AAGUCGGCAAGUGGUUUGCUGACUU   U
  ||||||||  |||||||||||||||||||||||||   A
  AAAGUUUU  UUCAGCCGUUCACCAAACGGCUGAA   A
AA        GU                         GUG
Stem-loop sequence UUUCAAAAUGAAGUCGGCAAGUGGUUUGCUGACUUAAUUAAGUGAAGUCGGCAAACCACUUGCCGACUUUGUUUUGAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01011317.1
ncRNA:21   GAACGGCUGAAGUAAAACUUU   1
  ****=||||||||||||||||
targets:812   AACAUCGACUUCAUUUUGAAA   832

3.0 TSA: Elaeis guineensis CL4042.Contig3_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01011316.1
ncRNA:21   GAACGGCUGAAGUAAAACUUU   1
  ****=||||||||||||||||
targets:812   AACAUCGACUUCAUUUUGAAA   832

3.0 TSA: Elaeis guineensis CL4042.Contig2_All transcribed RNA sequence NA coding protein psRNATarget