Search result

BaseInfo

ncRNA ID	novel_egu_miR683
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr8:23550458-23550621 [-]
Reference genome	EG5
Source	SRR3042545
Length	21
Mature sequence(if miRNA)	1 - CGAGAAACAGGGACGGAUCGC - 21
Stem-loop(if miRNA)	--      C              AU       A                 A A         AAACCC             U   GAUCCG CCCUGUUUCUCGGG  UUUUUUU AAGAAAGCUUUUUCAAA U AAGUUGGCA      UUGCUGGCUUCAC U   |||||| ||||||||||||||  ||||||| ||||||||||||||||| | |||||||||      |||||||||||||   CUAGGC GGGACAAAGAGCCC  AAAAAAA UUUUUUCGGAAAAGUUU A UUCAGCCGU      AACGGCCGAAGUG A CG      A              CG       A                 C C         ACCUAA             A
Stem-loop sequence	GAUCCGCCCCUGUUUCUCGGGAUUUUUUUUAAAGAAAGCUUUUUCAAAAUAAAGUUGGCAAAACCCUUGCUGGCUUCACUUAAGUGAAGCCGGCAAAAUCCAUGCCGACUUCACUUUGAAAAGGCUUUUUUAAAAAAAAGCCCCGAGAAACAGGGACGGAUCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JO095111.1	ncRNA:21   CGCUAGGCAGGGACAAAGAGC   1   *||=||=|||||||||||||| targets:126   CCGGUCUGUCCCUGUUUCUCG   146 Target Full Sequence	2.0	TSA: Elaeis guineensis isotig07879.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
XM_010929895.2	ncRNA:21   CGCUAGGCAGGGACAAAGAGC   1   *||=||=|||||||||||||| targets:382   CCGGUCUGUCCCUGUUUCUCG   402 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis photosystem I reaction center subunit V, chloroplastic-like (LOC105050039), mRNA	NA	coding protein	psRNATarget
GBSV01026159.1	ncRNA:21   CGCUAGGCAGGGACAAAGAGC   1   *||=||=|||||||||||||| targets:392   CCGGUCUGUCCCUGUUUCUCG   412 Target Full Sequence	2.0	TSA: Elaeis guineensis Unigene7989_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_019845717.1	ncRNA:21   CGCUAGGCAGGGACAAAGAGC   1   **|=|=|*||||||||||||| targets:561   UGGGUUCUUCCCUGUUUCUCG   581 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis BTB/POZ domain-containing protein At4g30940 (LOC105060196), mRNA	NA	coding protein	psRNATarget