Search result

BaseInfo

ncRNA ID	ath-miRf10916-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GCAAGAUGAUCACUGUGGUC - NA
Stem-loop(if miRNA)	C  CAG            CAC   GG  U     AA    -U   AGUUCAUGUUUUGCGGCAGCAGCCUUUUUUCUAUCACCUGGCGACAAGGGCAU CG GA   UGGCAAGAUGAU   UGU  UC CCAUA  GCGA  GCA                                                     G || ||   ||||||||||||   |||  || |||||  ||||  ||| GC CU   AUCGUUCUACUA   AUA  AG GGUAU  UCAC  GAC                                                     G   -  --A            --A   -A  C     AA    UU   AAACCUAGGUCGUGAAUAAGACCGUACACGUCGACUGCUCUUCCUAGGCAAAU
Stem-loop sequence	CGCGACAGUGGCAAGAUGAUCACUGUGGUCUCCAUAAAGCGAUGCAAGUUCAUGUUUUGCGGCAGCAGCCUUUUUUCUAUCACCUGGCGACAAGGGCAUGGUAAACGGAUCCUUCUCGUCAGCUGCACAUGCCAGAAUAAGUGCUGGAUCCAAACAGUUCACUAAUAUGGCGAAAUAAAUCAUCUUGCUAAUCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001331643.1	ncRNA:20   CUGGUGUCACUAGUAGAACG   1   |||||||||||||||||||| targets:2667   GACCACAGUGAUCAUCUUGC   2686 Target Full Sequence	0.0	Arabidopsis thaliana nuclear DEIH-boxhelicase (NIH), mRNA	nuclear DEIH-boxhelicase(NIH)	coding protein	psRNATarget
D84225.1	ncRNA:20   CUGGUGUCACUAGUAGAACG   1   |||||||||||||||||||| targets:2667   GACCACAGUGAUCAUCUUGC   2686 Target Full Sequence	0.0	Arabidopsis thaliana mRNA for DEIH-box RNA/DNA helicase, complete cds	NA	coding protein	psRNATarget
NM_100544.3	ncRNA:20   CUGGUGUCACUAGUAGAACG   1   |||||||||||||||||||| targets:2690   GACCACAGUGAUCAUCUUGC   2709 Target Full Sequence	0.0	Arabidopsis thaliana nuclear DEIH-boxhelicase (NIH), mRNA	nuclear DEIH-boxhelicase(NIH)	coding protein	psRNATarget
AK117857.1	ncRNA:20   CUGGUGUCACUAGUAGAACG   1   ||=||||||||||||||||| targets:261   GAUCACAGUGAUCAUCUUGC   280 Target Full Sequence	1.0	Arabidopsis thaliana At2g01130 mRNA for putative ATP-dependent RNA helicase A, complete cds, clone: RAFL19-02-B15	NA	coding protein	psRNATarget
NM_001335034.1	ncRNA:20   CUGGUGUCACUAGUAGAACG   1   ||=||||||||||||||||| targets:2165   GAUCACAGUGAUCAUCUUGC   2184 Target Full Sequence	1.0	Arabidopsis thaliana DEA(D/H)-box RNA helicase family protein mRNA	DEA(D/H)-box RNA helicase family protein(AT2G01130)	coding protein	psRNATarget
NM_126175.4	ncRNA:20   CUGGUGUCACUAGUAGAACG   1   ||=||||||||||||||||| targets:2402   GAUCACAGUGAUCAUCUUGC   2421 Target Full Sequence	1.0	Arabidopsis thaliana DEA(D/H)-box RNA helicase family protein mRNA	DEA(D/H)-box RNA helicase family protein(AT2G01130)	coding protein	psRNATarget