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BaseInfo

ncRNA ID novel_egu_miR663
Species Elaeis guineensis
Class miRNA
Genome position Chr6:27197712-27197855 [-]
Reference genome EG5
Source SRR3042545
Length 24
Mature sequence(if miRNA) 121 - UUCGAAUGAUAUGCGGAGGGUUCG - 144
Stem-loop(if miRNA) --U                  - UU          A    A                            AUUU
   UCGAAUGAUAUGCGGAGG G  CGAGAGAAAU UCGG CAGUAUUUUUCUUUAGUUCUUCUCACAC    U
   |||||||||||||||||| |  |||||||||| |||| ||||||||||||||||||||||||||||
   AGUUUACUAUACGUUUUC C  GCUUUUUUUA AGCC GUCAUAAAAAGAAAUCAAGAGGGGUGUG    C
AUU                  U UG          A    -                            CUGA
Stem-loop sequence UUCGAAUGAUAUGCGGAGGGUUCGAGAGAAAUAUCGGACAGUAUUUUUCUUUAGUUCUUCUCACACAUUUUCAGUCGUGUGGGGAGAACUAAAGAAAAAUACUGCCGAAAUUUUUUUCGGUCUCUUUUGCAUAUCAUUUGAUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010913907.2
ncRNA:24   GCUU---GGGAGGCGUAUAGUAAGCUU   1
  =|==---|||||*|||||||||||||=
targets:1837   UGGGUGCCCCUCAGCAUAUCAUUCGAG   1863

2.0 PREDICTED: Elaeis guineensis DDT domain-containing protein PTM (LOC105038189), transcript variant X1, mRNA NA coding protein psRNATarget