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BaseInfo

ncRNA ID novel_egu_miR658
Species Elaeis guineensis
Class miRNA
Genome position Chr11:17204541-17204664 [+]
Reference genome EG5
Source SRR3042545
Length 24
Mature sequence(if miRNA) 1 - AGGGAUAGAGCAUGCAGGAGCAUC - 24
Stem-loop(if miRNA) --     U     -    AGG    --U   -A   ----A    - -AA  G  CA        -  C
  AGGGA AGAGC AUGC   AGCA   CUA  GCC     CUUC C   AA AU  UCACCGAC CU C
  ||||| ||||| ||||   ||||   |||  |||     |||| |   || ||  |||||||| ||
  UCCCU UUUUG UGCG   UCGU   GGU  CGG     GAAG G   UU UA  AGUGGUUG GA U
CC     -     C    --A    UUU   CA   GAUUA    A AAG  G  AG        U  C
Stem-loop sequence AGGGAUAGAGCAUGCAGGAGCAUCUAAGCCACUUCCAAAAGAUCAUCACCGACCUCCUCAGUGUUGGUGAGAAUGUUGAAGAGAAGAUUAGGGCACUGGUUUUGCUAGCGUCGUUUUUCCCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JO096701.1
ncRNA:24   CUACGAGGACGUACGAGAUAGGGA   1
  ||||||||||||||||||=|||||
targets:525   GAUGCUCCUGCAUGCUCUGUCCCU   548

1.5 TSA: Elaeis guineensis isotig09474.Elguifruit mRNA sequence NA coding protein psRNATarget