ncRNA ID | novel_egu_miR658 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr11:17204541-17204664 [+] |
Reference genome | EG5 |
Source | SRR3042545 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGGGAUAGAGCAUGCAGGAGCAUC - 24 |
Stem-loop(if miRNA) |
--     U     -    AGG    --U   -A   ----A    - -AA  G  CA        -  C   AGGGA AGAGC AUGC   AGCA   CUA  GCC     CUUC C   AA AU  UCACCGAC CU C   ||||| ||||| ||||   ||||   |||  |||     |||| |   || ||  |||||||| ||   UCCCU UUUUG UGCG   UCGU   GGU  CGG     GAAG G   UU UA  AGUGGUUG GA U CC     -     C    --A    UUU   CA   GAUUA    A AAG  G  AG        U  C |
Stem-loop sequence | AGGGAUAGAGCAUGCAGGAGCAUCUAAGCCACUUCCAAAAGAUCAUCACCGACCUCCUCAGUGUUGGUGAGAAUGUUGAAGAGAAGAUUAGGGCACUGGUUUUGCUAGCGUCGUUUUUCCCUCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
JO096701.1 |
|
1.5 | TSA: Elaeis guineensis isotig09474.Elguifruit mRNA sequence | NA | coding protein | psRNATarget |