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BaseInfo

ncRNA ID novel_egu_miR655
Species Elaeis guineensis
Class miRNA
Genome position Chr10:31321773-31321915 [-]
Reference genome EG5
Source SRR3042545;SRR3042548
Length 24
Mature sequence(if miRNA) 120 - UUCGAAUGAUAUGCGGAGGGUUCG - 143
Stem-loop(if miRNA) --U                -   UU     A        AAC            -             CAUUU
   UCGAAUGAUAUGCGGA GGG  CGAGA AAAUUUCG   AGUAUUUUUUUU AGUUCUCCUCACA     U
   |||||||||||||||| |||  ||||| ||||||||   |||||||||||| |||||||||||||
   AGUUUACUAUGCGUUU CCC  GCUUU UUUAAAGC   UCAUAAAAAAGA UCAAGAGGGGUGU     C
AUU                U   UG     C        -CC            A             ACUGA
Stem-loop sequence UUCGAAUGAUAUGCGGAGGGUUCGAGAAAAAUUUCGAACAGUAUUUUUUUUAGUUCUCCUCACACAUUUUCAGUCAUGUGGGGAGAACUAAGAAAAAAUACUCCCGAAAUUUCUUUCGGUCCCUUUUGCGUAUCAUUUGAUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010913907.2
ncRNA:24   GCUU---GGGAGGCGUAUAGUAAGCUU   1
  =|==---|||||*|||||||||||||=
targets:1837   UGGGUGCCCCUCAGCAUAUCAUUCGAG   1863

2.0 PREDICTED: Elaeis guineensis DDT domain-containing protein PTM (LOC105038189), transcript variant X1, mRNA NA coding protein psRNATarget