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BaseInfo

ncRNA ID novel_egu_miR650
Species Elaeis guineensis
Class miRNA
Genome position Chr4:41725898-41725996 [-]
Reference genome EG5
Source SRR3042545
Length 21
Mature sequence(if miRNA) 79 - GAAUGUUGUCUGGCUCGAGGU - 99
Stem-loop(if miRNA) --     UU      CU    G   A  UCCCUGCAGAGUUUUUUUUUCC
  GAAUG  GUCUGG  CGAG UCU UA                      C
  |||||  ||||||  |||| ||| ||
  CUUAC  CGGACC  GCUC AAA GA                      C
CC     UU      AG    U   -  AAGUGGUCCUCUGUACAUCCAU
Stem-loop sequence GAAUGUUGUCUGGCUCGAGGUCUAUAUCCCUGCAGAGUUUUUUUUUCCCCUACCUACAUGUCUCCUGGUGAAAGAAAUCUCGGACCAGGCUUCAUUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019855414.1
ncRNA:21   UGGAGCUCGGUCUGUUGUAAG   1
  |||||*|||||||*|||||||
targets:729   ACCUCAAGCCAGAGAACAUUC   749

2.5 PREDICTED: Elaeis guineensis calcium-dependent protein kinase 26 (LOC105059338), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010942602.1
ncRNA:21   UGGAGCUCGGUCUGUUGUAAG   1
  |||||*|||||||*|||||||
targets:918   ACCUCAAGCCAGAGAACAUUC   938

2.5 PREDICTED: Elaeis guineensis calcium-dependent protein kinase 26 (LOC105059338), transcript variant X2, mRNA NA coding protein psRNATarget