Search result

BaseInfo

ncRNA ID	novel_egu_miR648
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr4:40743971-40744065 [+]
Reference genome	EG5
Source	SRR3042545
Length	22
Mature sequence(if miRNA)	1 - UCUUGCUCAAAUGAGUAUUCCA - 22
Stem-loop(if miRNA)	--        A          C    GA   A  GAU  UCUA     U   UCUUGCUC AAUGAGUAUU CAUU  GAA GU   CC    UGCUC G   |||||||| |||||||||| ||||  ||| ||   ||    ||||| C   AGAACGGG UUACUCAUAA GUAA  CUU CG   GG    ACGAG C GU        G          A    AA   -  ---  UCUA     A
Stem-loop sequence	UCUUGCUCAAAUGAGUAUUCCAUUGAGAAAGUGAUCCUCUAUGCUCUGCCAGAGCAAUCUGGGCUUCAAAAUGAAAUACUCAUUGGGGCAAGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GBSV01026522.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||*||||=*||||||||||||| targets:517   UGUAAUAUCCAUUUGAGCAAGA   538 Target Full Sequence	2.0	TSA: Elaeis guineensis Unigene8352_All transcribed RNA sequence	NA	coding protein	psRNATarget
JO092493.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||*||||=*||||||||||||| targets:458   UGUAAUAUCCAUUUGAGCAAGA   479 Target Full Sequence	2.0	TSA: Elaeis guineensis isotig05239.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO095618.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ***|||==|||||||||||||* targets:1556   CAAAAUGUUCAUUUGAGCAAGU   1577 Target Full Sequence	3.0	TSA: Elaeis guineensis isotig08387.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
XM_010922076.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ***|||==|||||||||||||* targets:1759   CAAAAUGUUCAUUUGAGCAAGU   1780 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis aspartate aminotransferase, cytoplasmic (LOC105044252), mRNA	NA	coding protein	psRNATarget
JO095994.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   |||||*|**||||||||||||| targets:508   UGGAAAAGACAUUUGAGCAAGA   529 Target Full Sequence	3.0	TSA: Elaeis guineensis isotig08764.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
GBSV01019886.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   |||||*|**||||||||||||| targets:408   UGGAAAAGACAUUUGAGCAAGA   429 Target Full Sequence	3.0	TSA: Elaeis guineensis Unigene1714_All transcribed RNA sequence	NA	coding protein	psRNATarget