Search result

BaseInfo

ncRNA ID	novel_egu_miR635
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr3:21806435-21806509 [-]
Reference genome	EG5
Source	SRR3042545;SRR3042548
Length	21
Mature sequence(if miRNA)	55 - UCGGAGAUCUGUGGGGAAGGA - 75
Stem-loop(if miRNA)	--   GAG               GAG  C    GG  C   UCG   AUCUGUGGGGAAGGA   CA CUAG  UU U   |||   |||||||||||||||   || ||||  || U   AGU   UAGGUACUCUUUUUU   GU GAUC  GG U AG   --A               GGG  U    UU  G
Stem-loop sequence	UCGGAGAUCUGUGGGGAAGGAGAGCACCUAGGGUUCUUUGGGUUCUAGUUGGGGUUUUUUCUCAUGGAUAUGAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GBSV01049862.1	ncRNA:21   AGGAAGGGGUGUCUAGAGGCU   1   ||||*||||*||||||||||| targets:160   UCCUCCCCCUCAGAUCUCCGA   180 Target Full Sequence	2.5	TSA: Elaeis guineensis Unigene31704_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010936505.2	ncRNA:21   AGGAAGG---GGUGUCUAGAGGCU   1   *||||||---|||||||||||||| targets:156   GCCUUCCUCUCCACAGAUCUCCGA   179 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis uncharacterized LOC105054874 (LOC105054874), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010936504.1	ncRNA:21   AGGAAGG---GGUGUCUAGAGGCU   1   *||||||---|||||||||||||| targets:162   GCCUUCCUCUCCACAGAUCUCCGA   185 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis uncharacterized LOC105054874 (LOC105054874), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01021809.1	ncRNA:21   AGGAAGG---GGUGUCUAGAGGCU   1   *||||||---|||||||||||||| targets:151   GCCUUCCUCUCCACAGAUCUCCGA   174 Target Full Sequence	3.0	TSA: Elaeis guineensis Unigene3637_All transcribed RNA sequence	NA	coding protein	psRNATarget