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BaseInfo

ncRNA ID novel_egu_miR632
Species Elaeis guineensis
Class miRNA
Genome position Chr2:29450224-29450414 [+]
Reference genome EG5
Source SRR3042545
Length 21
Mature sequence(if miRNA) 171 - UCCUAGAGCAGUUUGAUACCA - 191
Stem-loop(if miRNA) --C      -UUU  G     -  ---  -- AUAUAGAUGAGAUAUUGGCUAUAUUGUCGUAGAUGUGUACAGUUGGACAUGAUAUAUGAACUGCUAG
   UAUCAA    UU UGGGA GC   CA  U                                                                   G
   ||||||    || ||||| ||   ||  |
   AUAGUU    GA AUCCU CG   CU  G                                                                   G
ACC      UGAC  G     A  AGA  UA ACUGGUUUGACAGCGUACUGUGCUAGCUUUUCUACGGUGAGGUAAUAUAGUUUUGUUUAUUCAUCGU
Stem-loop sequence CUAUCAAUUUUUGUGGGAGCCAUAUAUAGAUGAGAUAUUGGCUAUAUUGUCGUAGAUGUGUACAGUUGGACAUGAUAUAUGAACUGCUAGGGUGCUACUUAUUUGUUUUGAUAUAAUGGAGUGGCAUCUUUUCGAUCGUGUCAUGCGACAGUUUGGUCAGAUUCAGAGCAUCCUAGAGCAGUUUGAUACCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01017581.1
ncRNA:21   ACCAUAGUUUGACGAGAUCCU   1
  |||||||||||||||||=|||
targets:156   UGGUAUCAAACUGCUCUGGGA   176

1.5 TSA: Elaeis guineensis CL6684.Contig2_All transcribed RNA sequence NA coding protein psRNATarget