ncRNA ID | novel_egu_miR632 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr2:29450224-29450414 [+] |
Reference genome | EG5 |
Source | SRR3042545 |
Length | 21 |
Mature sequence(if miRNA) | 171 - UCCUAGAGCAGUUUGAUACCA - 191 |
Stem-loop(if miRNA) |
--C      -UUU  G     -  ---  -- AUAUAGAUGAGAUAUUGGCUAUAUUGUCGUAGAUGUGUACAGUUGGACAUGAUAUAUGAACUGCUAG    UAUCAA    UU UGGGA GC   CA  U                                                                   G    ||||||    || ||||| ||   ||  |    AUAGUU    GA AUCCU CG   CU  G                                                                   G ACC      UGAC  G     A  AGA  UA ACUGGUUUGACAGCGUACUGUGCUAGCUUUUCUACGGUGAGGUAAUAUAGUUUUGUUUAUUCAUCGU |
Stem-loop sequence | CUAUCAAUUUUUGUGGGAGCCAUAUAUAGAUGAGAUAUUGGCUAUAUUGUCGUAGAUGUGUACAGUUGGACAUGAUAUAUGAACUGCUAGGGUGCUACUUAUUUGUUUUGAUAUAAUGGAGUGGCAUCUUUUCGAUCGUGUCAUGCGACAGUUUGGUCAGAUUCAGAGCAUCCUAGAGCAGUUUGAUACCA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GBSV01017581.1 |
|
1.5 | TSA: Elaeis guineensis CL6684.Contig2_All transcribed RNA sequence | NA | coding protein | psRNATarget |